Candidatus Nitrosomarinus catalinensis: NMSP_0456
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Entry
NMSP_0456 CDS
T04846
Symbol
truD
Name
(GenBank) putative tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
nct
Candidatus Nitrosomarinus catalinensis
Brite
KEGG Orthology (KO) [BR:
nct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nct03016
]
NMSP_0456 (truD)
Enzymes [BR:
nct01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
NMSP_0456 (truD)
Transfer RNA biogenesis [BR:
nct03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
NMSP_0456 (truD)
Prokaryotic type
NMSP_0456 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
ARS64079
UniProt:
A0A2Z2HM48
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All DBs
Position
392580..393776
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AA seq
398 aa
AA seq
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MIPEIDSQIGISVYTTKFSGIGGKIRINPEDFEVSELISKRATNSINNESGYAVYKLKKK
KIDTNHALSGVFRKTGVRLKSLGLKDASAITEQYVGSPHKGKPIDDFSTEKYSLTKIGFT
KKPLSKKEMIGNNFKIQISDCSDDLSSFTEHNQILNFYGYQRFGSKRPVTHLIGKAILQR
DFDTAVDLILSFTSSYDSAENTEIREKLSDKTNYVKYYDKVPSQMDIEKIVLKEMIEHDD
SIRAIRAIPLSLRRFYIQAYESYIFNKSLSSAFLDGENLFESQSGDVCFDSKSIIGKFKD
GVEQYLALPFVGYSYYKKTRFDHSISKILIEEEISPKDFFIKEMQEVSSEGGFRQAAIHC
TDYISEKNKVEFSLSRGSFATILLREIMKPSDPIRAGF
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
gtgatacctgaaattgactcacaaataggaatatctgtttacactacaaaattttctggt
attggtggtaaaattagaattaatcctgaagattttgaagtttctgaattaatttctaaa
cgtgcaacaaattctattaataatgaaagtggttatgctgtttacaaactaaaaaagaaa
aaaattgatactaatcatgccttatctggtgtttttcgaaaaactggcgttcgtctcaag
tctctaggcctaaaagatgcttctgctataactgagcaatatgttggctcgcctcataag
ggtaaacctattgacgatttttctactgaaaaatattctcttacaaagattggattcaca
aaaaaacccttatctaaaaaagagatgattggtaataattttaaaattcaaatttctgat
tgctctgatgatttatcttcttttactgaacataatcaaattttaaatttctatggatat
caaagatttggttccaaaagacctgttactcatttaattggaaaggcaattttacaaaga
gattttgatactgctgttgatttgatattatcattcacttcctcatatgattccgcagaa
aatacagagattcgtgaaaaactttctgacaaaacaaattatgtaaaatattatgataaa
gttccatctcaaatggatattgaaaaaattgttttaaaagaaatgattgaacatgatgac
tctatccgtgcaatacgtgcaattccattatctttaagacgtttttacattcaagcatac
gaatcatatatttttaataaatctctaagttctgcatttttagatggtgaaaatttattt
gaatctcaatctggtgatgtctgttttgactctaaaagtataattggaaaattcaaagat
ggggttgaacaatatcttgcattaccttttgttggttattcttactataaaaaaacaaga
tttgaccattccatttctaaaattttgattgaagaagaaatttctcccaaggattttttc
attaaagaaatgcaagaagttagtagtgaaggtggatttagacaagctgcaattcattgt
actgattatatctctgagaaaaacaaagttgaattttcattgtctcgaggttcatttgca
actatactgttaagggaaatcatgaagcctagtgatcctattcgcgctggattctga
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