Candidatus Nitrosomarinus catalinensis: NMSP_0481
Help
Entry
NMSP_0481 CDS
T04846
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nct
Candidatus Nitrosomarinus catalinensis
Pathway
nct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMSP_0481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nct03019
]
NMSP_0481
03009 Ribosome biogenesis [BR:
nct03009
]
NMSP_0481
Enzymes [BR:
nct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NMSP_0481
Messenger RNA biogenesis [BR:
nct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NMSP_0481
Ribosome biogenesis [BR:
nct03009
]
Prokaryotic type
rRNA helicases
NMSP_0481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_30
CMS1
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ARS64104
UniProt:
A0A2Z2HJ07
LinkDB
All DBs
Position
complement(405211..406596)
Genome browser
AA seq
461 aa
AA seq
DB search
MGNELYRHCLREENKMTKFKDLGLKEEVLRGITDQGFEEAFEIQEAVIPVLLSGRDVVGQ
AHTGSGKTAAFALSMLNDITPKKGIQGLIMAPTRELAMQISTEIKKMGKHTGIRIATVYG
GQGMGIQLDALHRGVEIIVATPGRLIDHLKRGSIELGDITHIVLDEADTMLDMGFVDDIQ
FILDLSPEDRVMSLFSATMPTAILRLSEDYLHNPKQFLLDADDLSGEGIDQSFLVIKDRD
KFKYLLDFIKKTRGQSVVFCSTKYRTRDVAKFLHQEKYNAVAIEGDMSQSRREQSMGKFR
SGKADILVATDVASRGIDVPKVELVVNYDVPNQEMAYFHRIGRTARAGAEGKAITFVSYS
SVGDWNIIKRQIKVPLRDLNQEMNIEISIPDPLKRQSSPRRYGGGGSRSNYSRGGSRGGG
YGRGGGYGRGGGGGYGRDNRGGKRRDNDNDGKNSYGGRSRW
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
gtgggcaatgagctttatcgtcattgcttaagagaagaaaacaaaatgacaaaatttaaa
gatctaggattaaaagaagaagtactaagaggaattactgatcaaggttttgaagaagca
tttgaaattcaagaagcagtaattccagtgttattatcaggcagagacgtagtgggtcaa
gcccatacaggttctggaaagacagcagcatttgcattatcaatgttaaatgatataact
ccaaaaaaaggaattcaaggactaatcatggcaccaacaagagaattagctatgcaaatt
agtacagaaatcaaaaaaatgggaaaacatacaggaattagaattgcaacagtatacggc
ggacaaggaatgggaattcaattagatgcactacatagaggagtagaaattattgtagca
acaccaggtagactaatagatcatctcaaaagaggttcaattgaattaggagatattact
cacatcgtactggatgaagcagacacgatgttagatatgggattcgtagatgatattcaa
tttattttagatttatcaccagaagacagggtaatgtctttattttcagcaacaatgcca
acagcaattttgagattatctgaagattatctacacaatccaaaacaattcttgttggat
gcagatgacctaagtggcgaaggaatagatcaatcatttttagtaattaaagacagagac
aaattcaagtatcttttagatttcattaaaaaaacaagaggacaatcagtggtgttttgt
tcaacaaaatatagaacaagagatgtagcaaaatttctacaccaagaaaaatacaatgca
gttgctattgaaggagacatgtcacaaagtagaagagaacaatcaatgggtaaatttaga
agcggtaaagcagatatcttagttgcaacagatgttgcctcaagaggaatagacgtgcca
aaagtagaattagttgtcaattacgacgtaccaaaccaagagatggcatattttcataga
ataggacgaactgccagagcaggagcagaaggaaaagcaattacatttgtatcatactca
tcagtaggagattggaatataattaaacgccaaatcaaggtaccacttcgagatctaaat
caagaaatgaatattgagatttcaatcccagatccactaaaaagacaatcatctccacga
agatatggcggcggaggatctagatcaaactattcaagaggtggaagcagaggcggtggc
tacggcagaggcggtggctacggcagaggcggtggcggtggctacggcagagataacaga
gggggcaagagaagagataacgacaatgatggaaaaaatagctacggtggacgtagtaga
tggtaa
DBGET
integrated database retrieval system
