Candidatus Nitrosomarinus catalina: NMSP_0522
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Entry
NMSP_0522 CDS
T04846
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
nct
Candidatus Nitrosomarinus catalina
Pathway
nct03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NMSP_0522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nct03400
]
NMSP_0522
DNA repair and recombination proteins [BR:
nct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NMSP_0522
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NMSP_0522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
DEAD
UVR
AAA_30
P-loop_SecA
UB2H
AAA_22
AAA_25
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
ARS64143
UniProt:
A0A2Z2HJA1
LinkDB
All DBs
Position
435476..437428
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AA seq
650 aa
AA seq
DB search
MLEQISKFDLVSDYDPTGDQPEAINALVEGVKKKSVQTLLGVTGSGKTFSVANVIARTGK
NTLVISHNKTLAAQLYAELKQFFPKNNVGYFVSYYDYYQPESYLPQTDTYIEKDTQINEK
IEKLRLEATAMLLSGEPTIIVSTVSCIYSLGNPQEWKDSSILVGAGDEIKRTDLIRKLVD
ARYERNDLEVAPGNFRVKGDTIDITPAYSEDIIRISMFGDEIEKITLLDHVSLKEKKKIN
QMTIFPAKHYLIAKDVTKRAVKSIRAELKQHLPKLNELEKQRLEMRTNYDLEMIEELGYC
SGIENYSRHFDGRNEGDKAYCLMDFFGDDYLLVIDESHVTLPQLHGMYKGDYSRKDKLVT
YGFRLPSAYDNRPLKFEEFEEYIQNTIFVSATPSEYEKKISAKIVEQLVRPTGLLDPQIE
IRSTKDQMDNLISEINERTKNSERVLVTTLTKRMAEDLAEYLSKKDVKVRYMHSEIDGLQ
RTEIIRQLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNFTSLIQTCGRAAR
NVTGTVIMYADTNTQSMKNTIDETSRRRQKQILYNEQHGIVPKTIMKSVPEQEIVLDESK
LKSIHDLRNDVIDLDAQMKKYSEELDFEQAISCRDRIKRLEKEIEYRNDR
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacaaatttctaaatttgatttggtatctgattatgaccctactggtgatcaa
cctgaagccattaatgctttagttgagggtgtaaaaaaaaagtctgttcaaactttgctg
ggtgttacaggaagtgggaagactttttcagttgctaatgttattgctcgaactggaaaa
aatacacttgtaatttctcataacaaaacacttgctgctcaattatacgctgaattgaaa
caattctttcccaaaaataatgttggttattttgtttcatactatgattactatcaacct
gaaagctatttgccacaaactgatacttacattgaaaaggatactcaaattaatgaaaaa
attgaaaaattacgattagaagcaactgcaatgttattgtcgggagaacctacaattatt
gtttccactgtttcttgtatctattctcttggtaatcctcaagagtggaaagattcttca
attctagttggtgctggagatgaaatcaaaagaaccgatttaattcgaaaattagttgat
gctagatatgaaagaaatgatcttgaagtagctcctggaaattttagagttaagggggac
actattgatattactcctgcatattctgaggatataattagaatttctatgtttggtgat
gagattgaaaagataactctgcttgatcatgtctcactaaaagaaaaaaagaaaataaat
caaatgactatttttcctgcaaaacattatctaattgctaaggatgttacaaaaagagct
gtaaaatcaatcagggctgaactaaaacagcatttgccaaaattgaacgaacttgaaaag
cagcgacttgaaatgagaacaaattatgatttagaaatgattgaagaattaggttattgt
tctggtattgaaaattactcaagacattttgatggacgtaacgaaggtgataaagcatat
tgtctaatggatttttttggagatgattatcttttggtaattgatgaatctcatgtaact
ttaccgcaactacatggaatgtacaaaggtgattattctagaaaagacaaacttgtcaca
tatggttttagattacctagtgcatatgataatagaccattaaaatttgaagaatttgaa
gaatatattcaaaatactatttttgtttcagccactccttctgaatatgaaaaaaaaata
tctgcaaaaattgttgaacaattagttcgacctacgggcttacttgacccacaaattgag
attaggtcaactaaagatcagatggataatttgatttctgaaattaatgaaagaactaaa
aattctgaacgagttttagttactaccttgactaaaagaatggctgaagatttagctgaa
tatctatcaaaaaaagatgttaaagtccgatatatgcattcagaaattgatggattacaa
agaactgaaattattcgtcaattacgtttaggcgaatttgacgttttagtgggaattaat
ctactgcgtgagggcttggatattcccgaagtttcacttgttgcaattcttgatgctgat
aaagaaggctttttacggaattttactagtttgatacaaacttgtggtagagctgcaaga
aatgtaactggcactgtgataatgtatgctgatactaatacccaatctatgaaaaatact
attgatgaaacttctcgtcgtagacaaaaacaaattttatacaatgagcaacatggaata
gttccaaaaacaattatgaaatctgttcctgagcaagaaattgtattagatgaatcaaaa
ttaaaatcaatacatgatcttaggaatgatgtaattgacttagatgctcaaatgaaaaaa
tattctgaagagttagactttgaacaagcaatttcttgtcgtgatagaattaaaagatta
gaaaaggagattgaatacagaaatgatagataa
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