Candidatus Nitrosomarinus catalina: NMSP_1296
Help
Entry
NMSP_1296 CDS
T04846
Symbol
rrp4
Name
(GenBank) Exosome complex component Rrp4
KO
K03679
exosome complex component RRP4
Organism
nct
Candidatus Nitrosomarinus catalina
Pathway
nct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMSP_1296 (rrp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nct03019
]
NMSP_1296 (rrp4)
Messenger RNA biogenesis [BR:
nct03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NMSP_1296 (rrp4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
NMSP_1296 (rrp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_6
KH_1
ECR1_N_2
RRP4_S1
RRP40_S1
KH_2
KH-I_KHDC4-BBP
KH_KRR1_2nd
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ARS64910
UniProt:
A0A2Z2HVZ6
LinkDB
All DBs
Position
complement(1020924..1021604)
Genome browser
AA seq
226 aa
AA seq
DB search
MADKRKYVIPGDVITSGPFRPEQNVVLEGNNIISTSVGISEIYEDSVKVIPLTGKYIPKI
NDLVIGKVISHTSLSWELDVNSCYVGFLPAQDVFGRDFSTHADELSSKLKTGDLVAARIA
NFDRTRDPLITISDRDLGKIDDGILVKISPSKVPRLIGKKGSMIQMIEMGTNAAITIGQN
GWVVISCETEEGLSKAKKAVEMVNEKAHIANLTDLIKEMLDGKDES
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atggcagataagagaaaatacgttattcctggtgatgtaattaccagtggaccttttaga
cctgaacaaaatgtagttttagaaggaaataacataatttctacatctgttggtatatct
gaaatttatgaagattctgttaaagtcattcctctaactggaaaatatattcctaaaatt
aatgatcttgtaattggtaaagttatttctcatacatcattatcttgggaattagatgta
aattcttgctatgttggatttttacctgctcaggatgtttttggaagagacttttcaact
catgctgatgaactttcaagtaaattaaaaactggtgatttggtagctgccagaattgca
aattttgacagaactagagatcctcttattacaatatctgatagagacttaggtaaaatt
gatgatggaattttagtaaaaatttctccaagtaaagttccacgtttgattggcaaaaaa
ggaagtatgatacaaatgattgaaatgggaactaatgctgccattacaattggccaaaat
ggctgggttgttatttcctgtgagactgaagaagggctctcaaaagctaaaaaggcagtt
gaaatggttaatgaaaaagcacatattgctaatttaactgatttaattaaagaaatgtta
gatggaaaggatgaatcataa
DBGET
integrated database retrieval system
