Candidatus Nitrosomarinus catalinensis: NMSP_1361
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Entry
NMSP_1361 CDS
T04846
Symbol
rpoB1
Name
(GenBank) DNA-directed RNA polymerase subunit B'
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
nct
Candidatus Nitrosomarinus catalinensis
Pathway
nct03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nct00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NMSP_1361 (rpoB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nct03021
]
NMSP_1361 (rpoB1)
Enzymes [BR:
nct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NMSP_1361 (rpoB1)
Transcription machinery [BR:
nct03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
NMSP_1361 (rpoB1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
DUF7245
FYVE_2
MRNIP
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-ProteinID:
ARS64974
UniProt:
A0A2Z2HM27
LinkDB
All DBs
Position
complement(1074975..1078325)
Genome browser
AA seq
1116 aa
AA seq
DB search
MADPSNKRWPVIQDILKREGIARQHLNSFDEFLERGLQSIINEVGQIDIENAEYPYKIQL
GKVKLQQPRMMELDGSITHITPAEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVP
VMAKSNACILNNFSNQKLIEHGEDPNDPGGYFIINGSERVIVGLEDLSYNKIIVDRELVG
GNTVFKAKVYSSIVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLMRALGLESDKEIAS
VVSLVDELQDELEGSFEKAGDVPTSKDAIVYISKRIAPGMLEEFQIKRAETLLDWGLLPH
LGKHPENRKEKAQFLGEAACKLLELKLNWITPDDKDHYGNKVIKFAGQMLADLFRTAFRN
LVRDMKYQLERSGQKRGINAVAASIRPGIITDKLNNAIATGNWGRGRVGVTQLLDRTNYL
STISHLRRIQSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSGIISVNV
PSEEIVEKLYDLGTVHFFDAKDDLKQDGTRIFVDGRLIGYYKDGLELAESLRDLRRNSKI
HPHVGVSFHKSDEHKEATRRLYVNCNAGRVLRPLIIIKDNKPLLTQDLLDKISKKLLSWN
DLLRMGVLEMIDANEEENCYITLDEKDSKKHTHLEVFPPAILGAGASIIPYPEHNQSPRN
TYESAMAKQSLGFSTPMMNTSTYVRQHLMLYPQVPAVNTKAMKLLGLEDRPAGQNCVVAV
LPFDGYNIEDAIVLSKASVDRGLGRTFFFRIYDAEAKQYPGGMRDSFEIPNAEDNVRGYK
GEKAYRLLEEDGVVASESPVKGGDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSE
AGVIDTVVMTQSNEGGKMYKIRARDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTAEG
MSPDVLINPHAFPSRMTVGMMMESICGKAASFRGKRFDGSAFVGEKMDEVKEVMDAHNFK
YSGKEIMYDGRTGKAFPVDVFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARG
GGLRFGEMERDCLIAYGASMILKDRLLDESDKSDVFVCERCGLVAYHDVKQRKYVCRVCG
DKAKVSSVSVAYAFKLLLQEMQSLNVAPRLLIKEKL
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
ttggctgatccttcaaacaaacgttggccagttattcaagatattttgaagcgtgaaggt
attgcacgtcaacatcttaattcctttgatgaatttttagaaagaggacttcaaagtatc
ataaatgaagttggacaaattgacattgaaaatgctgaatatccatataaaattcaatta
ggaaaagtaaaacttcaacaaccaagaatgatggaacttgatggttctattactcacatc
acgccagctgaagcaagattacgaaatgtttcttattctgcacctgtaatgatggaagcc
agtgttgttgaagatggtaaaattttggaatcaagatttgttcatattggtgatgtacca
gttatggcaaaatctaatgcatgtattttgaataatttctctaatcaaaaattaattgaa
catggtgaagatccaaatgatcctggtggctactttatcattaacggctcagaaagagta
attgttggattagaagatctttcttataataaaataattgtagatagagaacttgttggt
ggaaacactgttttcaaagcaaaagtttattcttcaattgttggttaccgtgcaaaatta
gaacttgttatgaaaaatgatggattgatagttgcaagaattcctggttctcctgtagat
attccagttgttactttaatgagagcactcggattagaatctgataaagaaattgcttca
gtagtttcactagttgatgaacttcaagatgaattagaaggctcttttgaaaaagcagga
gatgttcctacatctaaagatgctattgtttacatcagtaaaagaattgcacctggaatg
ttagaagaattccaaattaaacgtgctgaaactttacttgattggggtctattacctcat
ctaggaaaacaccctgaaaacagaaaagaaaaagcacaattcttaggagaggcagcatgt
aaattattagaattaaaactcaattggattactcctgatgataaagatcattatggaaac
aaagtcatcaaatttgcaggacaaatgcttgcagatttgtttagaactgcatttagaaat
ttggttagagatatgaaatatcaattagagcgttcaggtcaaaaacgtggaattaatgca
gttgctgcatcaattcgtcctggaattattactgataaactaaacaatgctattgcaaca
ggaaactggggtcgtggtagagttggagttacacaattacttgacagaacaaactatcta
tcaactatcagtcatcttagaagaattcaatcaccccttagtagaactcaaccaaacttt
gaagcaagagatttgcacgcaacacactttggaagaatttgtcctagtgaaacacctgaa
ggctcaaactgtggtttggtaaaaaatcttgcattatctggaatcatttcagtaaatgtt
ccttctgaggaaattgttgagaaattatatgatcttggaactgtacatttctttgatgca
aaagatgatttgaaacaagatggaactagaatatttgtcgatggacgattaattggatat
tataaagatggacttgaattagcagaatcactaagagatcttagaagaaattcaaaaatc
catccacacgttggagtttcattccataaatctgatgagcacaaagaggctactcgaaga
ttatatgttaattgtaatgctggacgagttttaagaccattaataattatcaaagataac
aaaccattacttactcaagatcttttagataaaatttcaaagaaattactatcttggaat
gatttgttaagaatgggtgtcttggaaatgattgatgcaaatgaagaggagaactgttac
attacattggatgaaaaagattcaaagaaacacactcatcttgaagtattcccaccagca
attttgggagcaggtgcatctataattccatatccagaacataaccaatctccaagaaat
acatacgaatctgcaatggcaaaacaaagtttaggattttcaacaccgatgatgaatact
agtacatatgttagacaacaccttatgctatacccacaagttccagctgtaaacacaaaa
gcaatgaaactacttggattagaagatagaccagcaggtcagaactgtgtagttgccgta
ttgccatttgatggttacaacattgaggatgcaattgttctcagtaaagcctctgttgat
agaggattaggtagaactttcttctttagaatttatgatgctgaagcaaaacaatatcct
ggtggaatgagagattcatttgaaattccaaacgctgaagataatgtaagaggttacaaa
ggtgaaaaagcatatagattacttgaagaagatggcgtagtagcatcagagtcacctgtt
aaaggtggagatattttgattggtaaaactagtcctccaagatttatggaagaataccga
gagtttgaatcctctggtccttatcgtagagatacatccattggtgtaagaccttctgaa
gccggtgtaattgatacagttgtaatgactcaatctaacgagggtggtaaaatgtataaa
attagagcaagagacatgagaattcctgaaattggtgataaatttgcttcaagacacgga
caaaaaggtgtacttggaattttagcaaaagcagaagacttaccatacactgctgaaggt
atgtcacctgatgttttaattaatccacatgctttcccatctagaatgactgtgggtatg
atgatggaatccatttgtggaaaagctgcatcattccgtggaaagagatttgatggttct
gcattcgttggagagaaaatggatgaagttaaggaagttatggatgcacataatttcaaa
tattctggtaaagaaataatgtatgacggaagaactggaaaagcattcccagttgatgtc
tttattggtgtagtatactatcaaaaacttcatcatatggttgccgacaaaatacatgca
agagcacgtggacaagttcagatgttaactaaacaaccaactgaaggtagagctagaggt
ggtggattgagatttggtgaaatggaaagagattgtttaattgcttatggtgcatcaatg
attctaaaagatagattgttagatgaatctgataaatctgatgttttcgtttgtgaaaga
tgtggtttagttgcttatcatgatgttaaacaaagaaaatatgtttgcagagtttgtgga
gataaagctaaagtatcttcagtatctgtggcatatgcattcaaattattattacaagaa
atgcaaagtcttaatgttgcaccaagattgctaataaaggagaaactctaa
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