Neptunomonas concharum: F0U83_03735
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Entry
F0U83_03735 CDS
T06194
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ncu
Neptunomonas concharum
Pathway
ncu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ncu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
F0U83_03735 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncu03021
]
F0U83_03735 (rpoD)
Transcription machinery [BR:
ncu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F0U83_03735 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Acidic_SOMP
Motif
Other DBs
NCBI-ProteinID:
QEQ95885
UniProt:
A0A5P1R9C3
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Position
complement(798169..800013)
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AA seq
614 aa
AA seq
DB search
MSGTSQQQSRLKELIARGKEQGYLTYAEVNDHLPEDIADPDQVEDIIRMINDMGISVSEE
APDAETLLMTEGDSAEEADEEAVAALAAVESDAGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSALASFPGSVEFVLDAYDTVLQEEGRLSDIFSGYIDPDSPIEEAVII
EPNAIVEDDDSDSDDDDDDDDSTDDEEDGDRGPDPEEARLRFTDIREKLAHLYSLQEKEG
RQSKAFSIALEELCEAFSPVKLTPRYYDILVARVRDFIDRTRQQERTIMRICVQRCKMPR
ADFIKAFPGNETNTNWFQELADSGESYARSISVNLPDLQRAQRKLIQIEGDAQIELAEIK
DVNRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPL
PEELAERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSSLGDFIEDSNHTSPVDSATGEG
LCEATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSDHLRSFLDE
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtacctctcagcagcaatctcgtctaaaagaactgatcgcccgcggcaaagaa
cagggttatctaacatacgccgaggtcaacgaccaccttccggaagatatcgccgatccc
gatcaggtggaagacatcatccgcatgattaatgacatgggtatctccgtgtctgaagaa
gctcctgatgccgaaacgcttttaatgactgaaggcgactctgctgaagaagccgatgaa
gaagccgttgccgcactggccgctgtagagtccgatgcaggcagaacaaccgaccctgtt
cgtatgtacatgcgcgaaatgggcacggttgagctgcttacgcgcgagggcgaaatcgaa
attgccaaacgcatcgaagaaggcattcgcgaagttatgtctgcgttagccagcttccca
ggctctgtcgaatttgtgcttgatgcatacgatacagtcctacaggaagaaggtcgcctt
agcgatatctttagtggctacatagatcccgacagcccgatagaagaagctgtcattatt
gaacctaacgccattgtcgaagatgatgacagcgatagtgacgacgacgatgatgacgat
gacagcacagatgacgaagaggatggcgatcgcggccctgatcccgaagaggcacgcctg
cgcttcactgatatcagagaaaaactagctcacctctacagccttcaagaaaaagaaggg
cgccagagcaaagcgttctcgatagcccttgaagagctatgcgaagctttctcccctgtc
aaactaacgcctcgctactacgacatcctcgtagcacgcgtcagagacttcattgataga
acacgccaacaagagcgcactattatgcgtatctgcgtgcaacgctgcaaaatgccccgc
gcagattttatcaaagcattcccaggcaacgaaaccaataccaactggttccaagaactt
gccgactctggtgaaagctatgctcgttctataagcgtcaacctaccagacctacaaaga
gcgcaaagaaagctaatccaaatcgagggagatgcccaaatagaactggcggaaattaaa
gatgttaaccgccgcatgtctattggcgaagctcgcgcccgtcgcgccaaaaaagagatg
gtagaagccaacctacgtttggttatctctattgccaagaaatacactaatcgcggctta
cagttcctcgacctcattcaggaaggcaatataggcctgatgaaagccgtggataaattt
gaatatcgccgtggctataagttttctacttacgcaacatggtggatccgacaagcgatt
acacgctctattgccgatcaggctcgtaccattcgtataccggtacatatgattgaaacc
atcaacaagctgaatcgcatctcacgacagatgcttcaggagatggggcgtgaaccttta
ccggaagaacttgccgaacgcatggagatgcctgaggacaaaattcgtaaggtactcaaa
atcgccaaagaacctatctccatggagacacccattggtgatgatgaagactcaagcctt
ggggatttcatcgaagattctaatcacacctcccctgtggactcagcaacaggcgaagga
ctatgtgaagcaacgcgcgaagtactcgcaggcttaactgccagagaagccaaagtactg
cgcatgcgttttggtatcgatatgaacaccgaccacacccttgaggaggtcggcaagcag
ttcgatgtaacgcgtgaacgtattcgtcaaatcgaagctaaagcgttaagaaaactgcgc
catccgagccgctccgatcacttacgcagcttcttggacgaataa
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