Neptunomonas concharum: F0U83_05110
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Entry
F0U83_05110 CDS
T06194
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ncu
Neptunomonas concharum
Brite
KEGG Orthology (KO) [BR:
ncu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncu03019
]
F0U83_05110 (hrpA)
Enzymes [BR:
ncu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
F0U83_05110 (hrpA)
Messenger RNA biogenesis [BR:
ncu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
F0U83_05110 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
WHD_HA2
AAA_19
AAA_25
nSTAND_NTPase5
NACHT
AAA_30
nSTAND3
T2SSE
ABC_tran
HSM3_N
Motif
Other DBs
NCBI-ProteinID:
QEQ96132
UniProt:
A0A5P1RA19
LinkDB
All DBs
Position
1091751..1095692
Genome browser
AA seq
1313 aa
AA seq
DB search
MPQESYVNSNLSHLESLIVSCLTSDQPRLSRKFAKLKQRLDDNLPASRLLDELTREVNES
QIKVDLRRAAFPVVSYPDLPVSGKREVIKEAIQSSQVVVVAGETGSGKTTQLPKICLDLG
LGELGLIGHTQPRRLAARTVATRIAEELGTNIGEGVGYQVRFTDEVGEFSLIKLMTDGIL
LAETQHDPLLSKYQVIIIDEAHERSLNIDFLLGYIKRILPKRPDLKVIITSATIDLERFS
KHFDSAPIIEVSGRTYPVDVIYRPLQSEDDDQKERSLQQGICDAVEEIIAMDRAERITGP
RDVLVFLSGEREIREAADRLRKMQLRDTEIMPLYARLSVAEQTRVFENQRHIGRRIVLAT
NVAETSITVPNIRYVIDTGVARISRYSYRSKVQRLPIEAISQASANQRAGRCGRIAAGVC
IRLYSEEDYKLRPEFTDAEIRRTNLAAVILQMLNLKLGNIADFPFIDPPDSRFISDGFKL
LEELGAVNPRRQMTALGKRLSQLPVDPRIGRMVLEASKQGALKEVLVIASALSVQDPRER
PMDKQQAADQAHAVYVDEHSDFLTVVNLWNSYESLRQALSQSQLRKHCQKSFLSFMRMRE
WRDIHRQLLLSCRQLGLKENSESADYKEIHISLLAGLLSHMGFRQENKEYLGARNRRFHL
FPASALFKKPAKWIMAAELVETTKLYARMVARIEPEWAERLASHLVKRSYLEPVWQKKRA
QVTAIEQVSLFGLLIIPKRTVNYGAIDPDVSHQVFIRSALVEGHYDTKARFFNHNQQLLN
QIEGLEAKTRRKDLLVDEEALYDFYAERFRTYQGEHVVNGAGFEKWRKQLEHERPDALCL
TEEDLLQRSTSHISQSAYPDEIKHKGMHLKLHYHFEPGAEDDGVTLSVPIALLKQLPLKR
LEWLVPGMLQDKCTALLKGLPKQRRKNFVPIPDYASALYEAMVFGDGDLYEAMCLQLLRM
TGVKLDPSELRDVVLPDHWRMNIRVKDAAGKQIAQGRDWQRLCEQYGHQAEKALESSPEQ
SWGRQGITRWDFGVIPDKIQLRQAGGIHVDAWPALQDKQESVALLAVMDAAKAKELTIQG
VIRLALLALVPQIRACRKALSTHSNESVLYTGKVFNKKMLEEQILSQSVRSLMALDNDLP
KDEASFELKVEAVKDGLEARIYEISKLVLVIHKQYHQAVKHLNGRVDLSTVTILNDIKSQ
LTHLINKTYISNISWSVLQQYPRYMDAILYRIEKYPREIPRQRMLSEQLHQWWEQYLGLK
SLLEKRGSGIDELMAFRWYLEEYRVSLFAQQLGTQEPVSEKRVRQRWQTLQPD
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaagagagttacgtgaatagcaatctatcccatttagagtctttaattgtcagt
tgtttaacaagtgatcagccgcggctttctcgcaagtttgctaagctcaagcaacgatta
gatgataacctgcctgcgtctcgcttactggatgaactcacccgtgaagttaatgagagt
caaataaaagttgatttacgtcgtgcagctttccccgtggtttcctatccagatctgcct
gtttctggaaagcgagaagtcattaaagaggcgatccaaagtagccaagttgttgtagtc
gctggtgaaacgggctcaggtaaaacgacgcagctacccaaaatatgtctcgatctagga
ttgggagaactagggctaattggtcatacacaaccccgccgactagcggctcgaacagtg
gcgacgcgtattgcagaggaactgggtactaacattggtgaaggtgtcggataccaagtt
cgttttacggatgaagtaggagagttttctcttattaagttgatgacggatggcattcta
ctggccgagactcagcatgatcctttgttatctaaataccaagttatcattattgatgaa
gcgcatgagagaagtttgaatatcgacttcttgcttggctacatcaaacgaattctgcct
aaacgtcctgacctaaaagtgattatcacttcagcgacaattgacttagagcgcttctca
aaacactttgatagcgcgcctattattgaagtatcaggaaggacatatccggtagatgtt
atctatcgtcctctacaatccgaggatgatgaccaaaaagagcgtagcctgcagcaagga
atttgtgacgcagtagaagagatcatcgctatggatcgggcggagcggattactggccca
agagatgtattagtttttctcagtggtgagcgtgaaattcgtgaagctgctgaccggtta
cgtaaaatgcagctgcgcgacacagaaattatgccgttgtatgctcgcctgagtgttgca
gagcaaactcgcgttttcgaaaatcagcgtcatatcgggcggcgtattgtgctggcaacc
aacgtggcagaaacgtcgattacggttcctaatattcgctatgtaattgataccggcgtc
gcacgtatctcgcgttatagttatcggtctaaggtgcagcgattaccgatagaagctatc
tcgcaagccagcgctaatcagcgagccggtcggtgtggccgtatagctgcgggtgtgtgt
attcggctctatagtgaagaggattataagctacgccccgaatttaccgatgctgaaata
cgtcgtaccaatttagcggcagttatcttacagatgctgaatttaaaactcggtaatata
gctgatttcccgtttattgatccgcctgacagtcgctttattagtgatggctttaaactg
ctcgaagaactcggtgctgtgaacccacgaaggcagatgacagcattaggtaagcgctta
agccaactgcctgtagatccccgtattggtaggatggtattggaggcctcaaagcaaggc
gcactgaaagaggttttagtaattgccagtgcgttaagcgttcaggaccccagagagcgt
ccaatggataagcagcaagcagcagatcaagcccatgctgtctatgtggatgagcattca
gattttctcaccgtcgttaatttatggaacagctacgagtcgcttcgacaagcgctttct
caatctcagttgcgcaagcattgtcagaaaagctttctctcttttatgcggatgcgggaa
tggcgagatattcatcgccagttgctattgagttgtcgccaattgggtcttaaagaaaat
agcgagtcagcagattataaagaaatacatatatcgctattagccggcttgcttagtcat
atggggtttcgccaggaaaataaagagtaccttggtgctagaaatcgacgttttcatctg
ttcccagcctcagccctatttaaaaagccggctaagtggattatggcggcggagctggta
gaaaccacgaagctctatgcacgtatggttgcacgcattgagccagaatgggcagaacga
ttagcatctcaccttgttaagcgtagttatctggagccagtgtggcaaaagaagcgtgca
caagtgaccgctattgagcaggtgtcgctgtttggtttgttgattatcccaaaacgcaca
gttaactatggggcgattgatcctgatgtatcccatcaggtttttatacgatcagcactg
gttgaagggcattatgatacaaaagctcgcttttttaatcacaaccagcaactgttgaat
caaatcgaagggctagaagcaaaaactcgaagaaaagatctgctggtggatgaagaggcg
ctttatgatttctacgcggagcgttttcggacatatcagggagaacatgttgttaatggt
gctggatttgagaaatggcgtaagcagttagagcatgagcgccccgatgcgctttgctta
acggaagaggatctactacagcgttctacttcccatatatcgcagagtgcttatcctgat
gaaataaagcacaaaggtatgcatcttaaactccactaccattttgagccgggtgcagaa
gatgacggtgtaactttatcagtacctattgccctgctaaaacagctacctttaaagcgc
ttagaatggctggtgccgggtatgctgcaagataaatgtacagcgttactaaaagggttg
ccgaagcagcgtcggaagaattttgtacctattcctgattatgcctccgcactttatgaa
gcaatggtgtttggtgacggagatctttatgaggcgatgtgccttcagttgctgcggatg
accggcgttaagcttgatccttcagaactgagggatgttgtcttgccagatcactggcgt
atgaatattcgtgttaaagatgcggcaggaaagcaaattgcgcagggtcgagattggcag
cgattatgcgagcaatatggccatcaagctgaaaaagctttggaaagtagccctgagcaa
agctggggtagacaaggaattacgcgatgggatttcggggtcattcctgacaaaattcag
ttgcgacaggcaggtggcattcacgtcgatgcttggccggcattacaagataagcaagag
agcgtcgcgctactagcggtaatggatgcggctaaggccaaagagctaacgatccaaggt
gttattcggttggcgctattggcgttagttccgcaaattcgggcctgtcgcaaggcgctg
tcgacccatagtaacgaaagtgtgctctatacgggtaaagtttttaataaaaagatgttg
gaagagcagatcttaagccaatcagtgcgttcgttaatggcattagacaacgacctgcca
aaggatgaagcctcttttgagttgaaagttgaagcagtgaaggatgggcttgaagctaga
atttatgaaatttcaaagcttgttttggtaatacataagcaataccaccaagcagtaaag
catttaaatggtcgtgtggacttaagcactgtaactattttgaatgacataaaaagccaa
ttaacgcatttaatcaataaaacctatatttccaatatatcgtggtctgttttacagcaa
tacccaagatatatggatgctatcctttaccggatagaaaaatacccaagagagatacca
cgacaacgtatgctcagtgagcaattacatcaatggtgggagcaatatttggggttaaag
agccttttggaaaaacgtggttcaggaatcgatgagcttatggcattccgttggtatctg
gaagagtaccgtgtttccttattcgcgcagcaattaggtactcaagaaccggtttctgaa
aaacgcgttcggcaaagatggcaaacgttacagcctgactaa
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