Neptunomonas concharum: F0U83_06075
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Entry
F0U83_06075 CDS
T06194
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ncu
Neptunomonas concharum
Pathway
ncu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F0U83_06075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncu03019
]
F0U83_06075
Enzymes [BR:
ncu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F0U83_06075
Messenger RNA biogenesis [BR:
ncu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F0U83_06075
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
Cas3-like_C_2
HI1480
Motif
Other DBs
NCBI-ProteinID:
QEQ96307
UniProt:
A0A5P1R9N5
LinkDB
All DBs
Position
complement(1299441..1300703)
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AA seq
420 aa
AA seq
DB search
MSFASLGLSTPLLDAITEQGYSTPTPIQAQAIPAVVSGKDVMAAAQTGTGKTAGFTLPLL
EKLSKGERARPNQVRALILTPTRELAAQVAESVETYGKNLPLRSVVVFGGVKINPQMMNL
RKGADVLIATPGRLLDLYSQNAVHFKQLEVLVLDEADRMLDMGFINDIRKILALLPKQRQ
NLMFSATFSDDIRKLAKGLVNDPIEISVSPRNTTAESVTQWVAPVDKNRKAALLIQLIKE
QQWFQVLVFTKTKHGANKLTKQLDSAGIKAAAIHGNKSQGARTRALAEFKRSDIQVLVAT
DIAARGLDIDQLPQVVNFELPNVAEDYVHRIGRTGRAGSSGQAISLVCADEFKLLAAIER
LTNQLITRKAINGYEPVNPLPESRLSNKPVRPKKPKKPKVPHRDGQRSGENARGHKPVRP
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgagctttgcctccctgggactatcaactccccttctggatgctattaccgaacaaggt
tattccacccctactcctattcaagcccaagctattcctgccgttgtttccggtaaagat
gtgatggcagcagctcaaacgggaacagggaaaacggcaggatttacattacccctgttg
gaaaaactatccaaaggagaacgcgctagacccaatcaggtaagagctctcattttaacg
cctactcgtgagcttgcagcgcaagttgccgaaagcgttgagacctatggaaaaaatctg
ccactgcgttcagtggttgtctttggaggcgttaagattaaccctcagatgatgaatcta
agaaaaggggcggatgtgctaattgccactccaggccgtttattagatctctatagccag
aacgccgttcactttaagcagctagaagtattagtactggatgaggctgatcgaatgctc
gatatgggcttcattaacgatattcgaaagattcttgcactactgcctaaacaacgacaa
aacctgatgttctctgcgacgttttctgacgacatcagaaaattagccaaaggcttggtc
aatgaccctatcgagatttctgttagccctagaaacacaacggcagaatctgtgacgcaa
tgggtagcacctgtagataaaaacagaaaagccgcattgctaatccagttaatcaaggaa
caacaatggttccaagttctggtctttactaaaaccaagcatggtgctaataagttaacc
aaacaactcgatagcgcgggaatcaaagctgcagccattcatggcaataaaagccaagga
gcacgcactcgagcacttgctgaatttaagcgcagtgatattcaagtgttagtggctact
gatattgccgcgcgcggattagatatcgaccagctgcctcaagttgttaactttgagcta
ccgaatgtagccgaagattacgtccaccgtatcggaagaacgggccgtgcaggttctagc
gggcaagcgatctctctggtttgcgctgatgagttcaaactactggctgccatagaaaga
ctgacaaaccagcttattacccgcaaagccataaatggctatgaaccggtaaacccactg
ccggaatcgcgtttatccaataagcccgtacgccccaaaaaacccaaaaagcctaaagtt
cctcatcgcgacggtcagcgatccggcgaaaatgccagagggcacaaacctgttaggcct
tga
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