Neptunomonas concharum: F0U83_07145
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Entry
F0U83_07145 CDS
T06194
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ncu
Neptunomonas concharum
Brite
KEGG Orthology (KO) [BR:
ncu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ncu03009
]
F0U83_07145 (rlmD)
Enzymes [BR:
ncu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
F0U83_07145 (rlmD)
Ribosome biogenesis [BR:
ncu03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
F0U83_07145 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
RrnaAD
TRAM
Methyltransf_11
Methyltransf_15
MTS
PCMT
TRM5-TYW2_MTfase
Methyltransf_23
Methyltransf_12
Methyltr_RsmB-F
Motif
Other DBs
NCBI-ProteinID:
QEQ96501
UniProt:
A0A5P1RB66
LinkDB
All DBs
Position
complement(1527216..1528604)
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AA seq
462 aa
AA seq
DB search
MKRLGIRFGRPKTKKNTTTDNTPIVLKIESLGHDGRGVGRHQGKTLFVEGALPNEQVHVD
IIATHKRFDEAKVSEIITPSADRVDPFCKHYDDCGGCQLQHLEHSVQIHHKQKSVLSQLQ
RIGQITPEVIETPLTSPSVHYRRSARVGINVLQRSGEVIVGFRRRKSNKLLDIDHCPILD
QRCDGLFSALKATLQDLHNPKGFTHAEILLGDQSIAIQIRCKHTPDKDSRELLETFAKTH
QLNLYIKTDTQLLTLCEASTKNAYQVADNKVELHFEPGDFLQVNASINQKMIDQAIDWLT
PASQDSILDLFCGLGNFTLPLAHYADHVTGIEGSDEMVSRANKNALINQLANVSFYRADL
AGDNQQQTWYQANYNKMLLDPPRSGAYELIDQMPLGMEKILYISCEPSALARDAKRLQEK
GYKLTRFCAMDMFPHTSHVESMALFEKAEKPKTKPKAGLFKR
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaagagattaggcatccgctttggtcggccaaagaccaaaaaaaacacgaccactgac
aacacccccattgtcctaaagatagagtcgctaggacacgatggccgtggcgtcgggcgc
catcaagggaagacactgtttgtagagggcgccctccccaatgagcaggtacacgtggat
attatcgctacgcataagcgatttgatgaagccaaagtgtcagagatcatcaccccttct
gcagatcgagtagatcccttttgcaaacattatgacgactgtggcggctgccagcttcag
caccttgagcattctgtgcaaattcaccacaagcaaaagagcgtgcttagccagctccag
cgcattggccaaatcacacccgaggttattgaaacaccacttacttcaccttcggttcac
tatcgccgatctgcccgtgtaggcattaacgtactccaacgcagcggtgaggtcatcgtt
ggattcaggcggcgaaaaagcaacaaactactggatattgatcactgccccatactagac
cagcgctgtgatggtctatttagtgcgctaaaagctacgctgcaagatctccataaccct
aaaggcttcacgcatgctgaaatccttctaggcgatcaaagtatcgctatacagatccgc
tgcaagcacacgccggataaagacagccgtgaactgttggaaacctttgccaaaacgcac
cagctcaacctctatatcaaaaccgatactcaactcctgacgctttgcgaagcttcaacc
aagaacgcttatcaagtcgctgataacaaggttgaacttcactttgagcctggcgacttt
ttgcaggtcaacgcaagtatcaaccagaagatgattgatcaagcaatcgattggctgaca
ccggcctcacaagatagcattctagatctcttctgtggccttggtaattttacactgcca
ctggcgcactatgccgatcacgttacaggcattgagggcagcgacgaaatggtgagtcga
gcaaacaagaacgctctgattaaccaattagccaacgtctctttttatagagcggacctt
gctggcgataatcaacagcagacctggtatcaagcgaattacaacaaaatgctacttgat
cctcccagatctggtgcttacgaactgatagaccaaatgccgttaggtatggagaaaatt
ctctatatttcctgcgaaccttcagcacttgctcgcgacgctaagcgtttgcaggagaaa
ggctataaattaacacgcttctgcgctatggatatgttcccacacaccagccatgtcgag
tcgatggccctgtttgaaaaagcggaaaagccaaaaaccaaacccaaagccggactgttt
aaacgatga
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