Neptunomonas concharum: F0U83_16080
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Entry
F0U83_16080 CDS
T06194
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ncu
Neptunomonas concharum
Pathway
ncu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F0U83_16080 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncu03021
]
F0U83_16080 (rho)
03019 Messenger RNA biogenesis [BR:
ncu03019
]
F0U83_16080 (rho)
Transcription machinery [BR:
ncu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
F0U83_16080 (rho)
Messenger RNA biogenesis [BR:
ncu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
F0U83_16080 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
Fungal_virus_P2_C
S1CSD-TOTE-2
AAA_22
AAA
AAA_25
Spore_III_AA
NACHT
DUF7909
Motif
Other DBs
NCBI-ProteinID:
QEQ98107
UniProt:
A0A5P1RES6
LinkDB
All DBs
Position
complement(3372191..3373450)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTQLKTKSVPELLEIAQEMGLDNLARSRKQDVIFAILKKHSKSGEDIYGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDSERYFALLKVNEIN
YDRPENAKNKILFENLTPLFAQQRLRMEIGNGSTEDITARVLDLVSPMGKGQRALVVSPP
KAGKTLMLQNIANSITRNNPECHLIVLLIDERPEEVTDMQRTVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLTEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF
FGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNSEVHLDRKIAEKRVFPAINI
RRSGTRREDLLTTEDELQRMWILRKLLDSMDDSAATEFVIDKLKDFKTNDEFFMSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttacccaattaaaaactaaaagcgttcctgaacttctcgaaatcgctcaggaa
atgggactcgacaatctggcccgctcacgcaaacaagatgtcattttcgcaatccttaaa
aaacactctaagagtggcgaagatatttacggcgatggtgtcctggagattcttcaggat
ggtttcggtttcttacgctctgcggactcttcttatttagcgggccctgacgacatctat
gtttctccaagccagatccgtcgttttaatttgcgtaccggcgataccattgcaggtaaa
attcgcccaccaaaagatagcgagcgttatttcgcactgttgaaagttaatgaaattaac
tacgaccgtcctgaaaatgctaagaacaaaattctattcgaaaacttaacgcccttgttt
gcgcaacagcgtcttcgaatggagattggtaacggcagtactgaagatatcacagcgcgt
gtactggacttagttagcccaatgggtaaaggtcagcgtgcattggtggtttcaccgcct
aaagcgggtaaaacgctgatgttacagaacattgctaacagtattacgcgtaacaaccct
gaatgccatttgatcgtactgttgatcgatgagcgcccagaggaagtaacggatatgcaa
cgcaccgttcgtggcgaggttgtcgcgtcaacctttgatgagccgccagcccgacatgtg
caagtggccgaaatggtgatcgagaaggctaaacgtcttactgagcacaaaaaagatgtc
gtgattctgctggactctatcacccgtttagcacgtgcttacaatacggttattccatca
tctggtaaggtgcttacaggtggtgtggatgcccatgcgcttgagcgtccgaagcgcttc
tttggtgctgctcgtaatatcgaagaaggcggaagcttaacgatcattgcaacggcattg
gtagatacgggttctaaaatggatgaagttatctttgaagagttcaaaggtacgggtaac
tcggaagttcatttggaccgaaaaatagctgaaaagcgtgtcttccctgccattaacatt
cgtcgctccggtactcgtcgcgaagatctgttaacgactgaagatgaattgcaacggatg
tggatcctacgcaagttgctagactctatggacgactctgctgctactgaattcgttatt
gataaattgaaagacttcaaaacgaatgatgaattcttcatgtcaatgaaacgcaaataa
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