Candidatus Nitrosocaldus cavascurensis: NCAV_0163
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Entry
NCAV_0163 CDS
T05329
Symbol
csl
Name
(GenBank) Exosome complex component Csl4
KO
K07573
exosome complex component CSL4
Organism
ncv
Candidatus Nitrosocaldus cavascurensis
Pathway
ncv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCAV_0163 (csl)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncv03019
]
NCAV_0163 (csl)
Messenger RNA biogenesis [BR:
ncv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NCAV_0163 (csl)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
NCAV_0163 (csl)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
DUF8118
FtrD-like
C1_1
DnaJ_CXXCXGXG
Beta-prop_WDR19_1st
RRP40_S1
Motif
Other DBs
NCBI-ProteinID:
SPC33363
UniProt:
A0A2K5ANZ4
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All DBs
Position
NCAV:complement(150587..151147)
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AA seq
186 aa
AA seq
DB search
MRIRFALPGDRIATIEEFEGLEGIYQHEDGMLRASRIGKVTYDMKQRYVRVNGLKSMLIP
KKDDHVIGFIHMLTSNSANIRIVYINDLKSDARFDAIYIGRGKVKVHNMFRVGDMVRAKV
VSILNGYIHVTFKDGNFGVIYTRCNQCGGEVVKLNAEEVKCVECNTVSSRKLADDYGNLN
TIWRCN
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atgaggataagatttgcactcccaggagataggatagcaacgatagaggagtttgaggga
cttgagggtatataccagcatgaggatggtatgcttagggcaagcaggataggcaaggtt
acatatgatatgaagcagaggtatgtgagggttaatggtcttaagagcatgctcattcca
aagaaggacgatcatgttatagggttcatacacatgctaacatccaactctgcaaatata
aggatagtctacataaacgatttgaagagcgatgcaaggttcgatgcaatatacataggt
agaggcaaggttaaggttcataacatgttcagggttggagatatggttagagcaaaggtt
gtgagcatacttaatgggtatatacatgtaaccttcaaggatggtaactttggggttata
tacacaaggtgcaaccagtgtggtggagaggttgtaaagcttaatgctgaggaggtaaag
tgtgtagaatgtaatacagtatcctcaaggaagcttgcagatgactatggcaatctcaat
acgatatggcgttgtaactga
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