Candidatus Nitrosocaldus cavascurensis: NCAV_0245
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Entry
NCAV_0245 CDS
T05329
Symbol
truB
Name
(GenBank) putative tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
ncv
Candidatus Nitrosocaldus cavascurensis
Brite
KEGG Orthology (KO) [BR:
ncv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ncv03016
]
NCAV_0245 (truB)
Enzymes [BR:
ncv01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
NCAV_0245 (truB)
Transfer RNA biogenesis [BR:
ncv03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
NCAV_0245 (truB)
Prokaryotic type
NCAV_0245 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_C_2
TruB_N
PUA
DKCLD
Pus10_C
Motif
Other DBs
NCBI-ProteinID:
SPC33442
UniProt:
A0A2K5AP78
LinkDB
All DBs
Position
NCAV:230792..231826
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AA seq
344 aa
AA seq
DB search
MICNSKLPQLNDLLSIDDDVTDEHYGYHPFSRPIDVLLDYGLIALDKPAGPTSHEVVAWV
KRILAVESAGHSGTLDPPTTGLLPIGLGEATKALTVLLLGPKEYYAIARLHAVVPSKMLH
DVVSMFIGDIYQRPPQRSSVKREVRVRRIYELEVLEEHGRLLLLRVLCQAGTYVRKLIYD
IGEVLGSGASMVELRRTRVSMLDEDDMVRLHDLYDAYMLWREKGEEEKLRSIIKPIEYAL
MHVKAVVVRDSAVDSICHGAQLAVPGVLKVSKDLQKGDLVGIYTLKGELVALAEAMMSAH
EIAEADKGIAFTLKRVIMKPNTYPKAWKSKSSSSSNSSSRSEVV
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgatatgcaatagcaagttgcctcaactcaacgatctgcttagcatagatgatgatgtt
acagatgagcattatggctatcatccattctctaggcctatagatgtactgctagactat
ggtctaatagcacttgacaagccagcaggaccaacaagccatgaggtggttgcatgggtt
aagaggatccttgcagtagagagtgcagggcatagtggtacacttgaccctccaactact
ggcctacttcctatagggcttggagaggcaaccaaggcactaactgtactgctccttgga
cccaaggagtactatgccatagcaagactacatgcagtagtgcctagcaagatgctccat
gatgtagtaagcatgttcataggcgatatataccagaggccccctcagaggtcatctgtg
aagagggaggttagggtaaggaggatatatgagttggaggtgcttgaggagcatggtagg
ttactcctgctcagggtgctatgccaagcaggaacatatgttaggaagttgatatacgat
ataggagaggtactaggctctggtgcaagcatggtagagttgaggaggacaagggttagc
atgctagatgaggatgatatggttaggctccatgacctctacgacgcatacatgctatgg
agggagaagggtgaggaggagaagttaaggagtatcataaagcctatagagtatgcttta
atgcatgtgaaggctgtagtggtaagggatagtgctgtagactctatatgccatggtgca
cagttggcagtgccaggggttctgaaggtatccaaggatctgcagaagggtgatcttgtt
ggtatatacaccttgaagggagaacttgttgcacttgcagaggctatgatgtctgcacat
gagattgctgaggctgataagggtatagcattcacactcaaacgtgttattatgaagcca
aacacataccccaaggcttggaagagtaagagcagcagtagcagtaacagtagtagtaga
agtgaagttgtatga
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integrated database retrieval system
