Candidatus Nitrosocaldus cavascurensis: NCAV_0354
Help
Entry
NCAV_0354 CDS
T05329
Symbol
xpf
Name
(GenBank) putative DNA repair nuclease XPF
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
ncv
Candidatus Nitrosocaldus cavascurensis
Pathway
ncv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCAV_0354 (xpf)
03460 Fanconi anemia pathway
NCAV_0354 (xpf)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncv03032
]
NCAV_0354 (xpf)
03400 DNA repair and recombination proteins [BR:
ncv03400
]
NCAV_0354 (xpf)
DNA replication proteins [BR:
ncv03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
NCAV_0354 (xpf)
DNA repair and recombination proteins [BR:
ncv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
NCAV_0354 (xpf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
HHH_5
HHH
HHH_2
HHH_3
UPF0758_N
DUF483
Motif
Other DBs
NCBI-ProteinID:
SPC33548
UniProt:
A0A2K5APG9
LinkDB
All DBs
Position
NCAV:complement(319434..320168)
Genome browser
AA seq
244 aa
AA seq
DB search
MESSKKARLRIVVDEREKRSMVPDALKELGANVEYAVLDVGDYLVYGNCCIERKSVDDLI
NSIYDARLFIQVDEMLKHYSRSVVIVEGSSEDIEGMDKPNVLYSALASLAVEYRVPVVYT
PSYLHTALAIVALAKHCSSKEDAYREPLLKRIRKSKDGLLREQQLSIIASLPGIGSRLAS
RLLERFGSPINIFNASTADLARVEGIGYAKARKIRYALDTSISSKFTRHNLLDDYTDATD
VRNG
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
atggagagtagtaagaaggctaggttaaggatagtagttgatgagagggagaagaggagc
atggtgccagatgcactgaaggagttgggcgctaatgttgagtatgcagtattggatgtt
ggagattatttggtttatggaaactgctgtattgaacgtaagagtgttgatgatctaatc
aactccatatacgatgctaggttattcatacaggtggatgagatgctcaagcactactca
aggtcagtagttatagttgagggttcatcagaagatatagaaggtatggataagccaaat
gtgctatatagtgctttggcatcgctagcagttgagtatagagtgccagttgtatacacc
ccatcctatctacatacagcacttgccatagttgcattggcaaagcactgcagtagcaag
gaggatgcatatagggagcctttgcttaagaggataaggaagagcaaggatggattgcta
agggagcagcagttaagcatcatagcatctcttccaggaatagggagtaggttagcatca
agactgcttgagaggtttggatctccaataaacatattcaatgcctctacagcagatcta
gcaagggttgagggcataggatatgccaaggcaagaaagataagatatgctcttgataca
agcattagcagtaagtttactaggcataatttgcttgatgattacacagatgctacagat
gtaaggaatggatga
DBGET
integrated database retrieval system
