Candidatus Nitrosocaldus cavascurensis: NCAV_0359
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Entry
NCAV_0359 CDS
T05329
Symbol
rrp
Name
(GenBank) Exosome complex component Rrp42
KO
K12589
exosome complex component RRP42
Organism
ncv
Candidatus Nitrosocaldus cavascurensis
Pathway
ncv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCAV_0359 (rrp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncv03019
]
NCAV_0359 (rrp)
Messenger RNA biogenesis [BR:
ncv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NCAV_0359 (rrp)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
NCAV_0359 (rrp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
SPC33553
UniProt:
A0A2K5API8
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All DBs
Position
NCAV:complement(322541..323389)
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AA seq
282 aa
AA seq
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MGMSVKKTTTIVEQLRRAQMSELLAMSKRLDGRGLRDYRELRIDVGLIKKANGSALVSLG
NTQVIAGIKVEVDEPFPDMPDKGLFICNAEVLPLASPYAEPGPPDEDAIELARVVDRGIR
ESEMIALDKLVLISGKKVYAVFADVSVLNSDGNLFDATSYAVVAALLTARIPKYDVQDDK
LVKSEETIPLPINTIPVSVTMAKIGNSIIVDPTAEEEACMDARITMATDEHGRVCAIQKG
GSGTFSLEQLSEVATLAISIGKEMREKIGNVAARAREQEQDK
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atggggatgagtgttaagaagactaccaccatagtagagcaactaaggagggcacagatg
agcgaactccttgcaatgagcaagaggcttgatggcagagggctgagggattacagggag
ttgaggatagatgttgggttgataaaaaaggccaatggctctgcccttgtctctcttggc
aatacacaggttatagcaggcataaaggttgaggttgatgaacccttcccagatatgcca
gataaaggactattcatatgcaatgctgaggttctgccattggcatcaccatacgcagag
ccaggacctccagatgaggatgcaatagaacttgctagggttgttgatagagggataaga
gagtcagagatgatagcattggacaaactcgtgcttataagtgggaagaaggtctatgct
gtatttgctgatgttagcgtactcaactcagatggcaacctattcgatgcaacatcatat
gctgtagtagcagcactacttacagcaaggataccaaagtatgatgtacaggatgataag
ctggttaagagtgaggagaccatacctctaccaataaacaccatacctgtatctgttact
atggcaaagatagggaatagcataatagttgatccaactgctgaggaagaggcatgcatg
gatgctaggataacaatggctacagatgagcatggaagggtatgtgccatacagaaagga
ggtagcggtacattctcattagagcagttgagcgaggtggcaactctagcaataagcata
gggaaagagatgagagagaagataggtaatgttgctgcaagagcaagagagcaggagcag
gacaaataa
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