Candidatus Nitrosocaldus cavascurensis: NCAV_0484
Help
Entry
NCAV_0484 CDS
T05329
Name
(GenBank) Phosphoesterase DHHA1, RecJ-like
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ncv
Candidatus Nitrosocaldus cavascurensis
Pathway
ncv03410
Base excision repair
ncv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NCAV_0484
03430 Mismatch repair
NCAV_0484
03440 Homologous recombination
NCAV_0484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncv03400
]
NCAV_0484
DNA repair and recombination proteins [BR:
ncv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NCAV_0484
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NCAV_0484
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCAV_0484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
SR-25
Motif
Other DBs
NCBI-ProteinID:
SPC33677
UniProt:
A0A2K5APZ1
LinkDB
All DBs
Position
NCAV:complement(433079..434590)
Genome browser
AA seq
503 aa
AA seq
DB search
MSNTNDLSMDSFLQKLSSRILDAIASRKRIMVITHSDADGLVSGSIIAKAIIRKGGRCLV
RVVSDLNPNVLKKVAGEEHDLYIITDMGAGLAGVIDEYIGKGKGKDWMVIDHHQLPEEEM
NDDRIFNAWKFGIDGGVEACAGTMAYKVAYALDESNKDLSALAVVAMVADRQDQGERKSL
IGLNADVADTARELGLLSIDLDLMLVGRETRAVHEALAYTSYPYIDGLTWNVDSCYSLLN
SIGLRLKEDGRWRTLAEMSSEEKSKIVEAIAMFASSSTSSSPPSSSPSSSSSTNSRNASM
IVDELIGYVYTLQREDKRSMLRDAREFSLMLNACARIRRSGVGIAICMGDRNSMLMEGEI
IVNEYRKTLRGYISTIMSERWRVVDDGMLAMVNGDNLIAQDMLGAVSSLLSGSQAFQGRV
IVVRTRTDDGMYKFSCRKGLNCSIDVNLGLLMRECSSRCNGVGGGHVAAAGARISADMLD
EFLRCVKEGVHKHKGSVGGDAGG
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgagtaataccaatgatctgagcatggattcattcctacagaaactatctagcaggata
ctggatgctatagcatcaaggaagaggatcatggttataacacactctgatgctgatggt
cttgtctctggtagcataatagccaaggctataataaggaagggtgggcgatgcctcgtt
agggttgtgagcgatctcaaccctaatgtgttgaagaaggttgctggggaggagcatgac
ctatacataataacagatatgggtgctggccttgcaggtgttatagatgagtatataggc
aaaggcaagggtaaggattggatggttatagaccatcaccaactcccagaggaggagatg
aacgatgatagaatctttaatgcatggaagttcggcatagatggaggggtagaggcatgt
gctggtacaatggcatacaaggttgcctatgctctagatgaatccaacaaggacctatca
gcacttgcagtagttgccatggttgctgatagacaggatcagggtgagaggaagtctctc
attgggcttaatgcagatgttgcagatactgcaagggagcttggattgctaagcatagat
cttgatctcatgcttgttggtagggagactagggcagttcatgaagcacttgcatacact
tcatatccatacatagatgggctaacatggaacgttgattcatgctactctctactcaac
tccatagggctaaggctgaaggaggatggtagatggcgtacactagcagagatgagtagt
gaggagaagagcaagatagttgaggctatagcaatgtttgcttcctcatctacctcttct
tcacctccctcttcctctccatcatcatcttcctctaccaactcaaggaatgcaagtatg
attgtggatgagttgataggctatgtgtacaccttgcaaagagaggataagaggagcatg
cttagggatgcaagggagttcagcctcatgctcaatgcatgtgcaaggataaggaggtct
ggggttggaatagcaatatgcatgggtgataggaactcaatgcttatggagggtgagatt
atagtcaatgagtatagaaagaccctaagaggttacataagcacgataatgagtgagaga
tggagggttgttgatgatggtatgctagccatggttaatggtgataacctcatagcacag
gatatgcttggggcagtctcatcactgcttagtgggtctcaagcattccaaggcagggtt
atagttgtaaggactaggacagatgatggtatgtacaagttctcctgcaggaagggtctg
aactgtagcatagatgttaaccttggtctattgatgcgtgaatgctcgagcagatgcaat
ggggttggtggagggcatgttgctgctgctggtgcaaggataagtgcagatatgcttgat
gagttcttaaggtgtgttaaggaaggtgtgcacaagcataaaggcagtgtgggaggggat
gcagggggttaa
DBGET
integrated database retrieval system
