Candidatus Nitrosocaldus cavascurensis: NCAV_0536
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Entry
NCAV_0536 CDS
T05329
Symbol
rtcB
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ncv
Candidatus Nitrosocaldus cavascurensis
Brite
KEGG Orthology (KO) [BR:
ncv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ncv03016
]
NCAV_0536 (rtcB)
Enzymes [BR:
ncv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NCAV_0536 (rtcB)
Transfer RNA biogenesis [BR:
ncv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NCAV_0536 (rtcB)
Prokaryotic type
tRNA splicing ligases
NCAV_0536 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Complex1_LYR
DUF7438
DUF3492
Motif
Other DBs
NCBI-ProteinID:
SPC33729
UniProt:
A0A2K5AQ49
LinkDB
All DBs
Position
NCAV:475326..476777
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AA seq
483 aa
AA seq
DB search
MMSDYIKRVSDVEYRIDPIASKGMRVPVTIYANEQLLSKMLSDRTIQQAMNVATLPGVQK
HVVVLPDGHEGYGFPVGGVAAMSLDDGVISPGGVGYDINCGVRLIRTDLREEDVRPRLRE
LVNELFRAVPSGVGSEGVVKLSSSELDEVLTEGVYWAIRNGYGWSEDADVCEENGKMRGA
DPSKVSNMARKRGAPQLGTLGSGNHFLEVQKVDRIYDKEAAKAMGIEQEGQITVLIHCGS
RGLGHQICSDYLRVSEVALKKYGITLPDRELACVPNNSEEGEAYRKAMYSALNFAWSNRQ
MITHWTRKAFEKVFNASENDLNMHLVYDVAHNIAKVEEHKVDGSLKRVVVHRKGATRAFP
AGREEIPAKYRAIGQPVLIPGSMGTASWILLGSPKAMELTFGSTAHGAGRTMSRAAAKRS
YTAQEVQKRLESRGIYIKALTREGVVEETPEAYKDVDAVADVSHSVGIATKVARLVPIGV
IKG
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcgattacataaagagggtaagtgatgttgagtataggatagatcctatagca
agcaaaggtatgagggtgccagtgaccatatatgcaaatgagcaactgctcagcaagatg
cttagcgatagaactatacagcaggctatgaacgttgctacccttccaggtgtacagaag
catgttgtagtgctaccagatgggcatgagggttatggcttccctgttggaggagtagct
gccatgagccttgatgatggtgtcataagccctggaggagtaggctatgatataaactgt
ggagtgaggcttataaggacagatcttagggaagaggatgttagaccaaggttaagggag
ttggttaatgagttgttcagggcagtaccatctggggttggtagtgaaggggttgtgaag
ttgagtagttctgaacttgatgaggtgcttacagagggtgtgtactgggctataaggaat
ggttatggatggagtgaggatgcagatgtgtgtgaggagaatggcaagatgaggggtgca
gatccaagcaaggtatctaacatggcaaggaagagaggtgcaccacaacttggtactcta
ggctctgggaatcacttccttgaggttcagaaggttgataggatatatgataaggaggca
gcaaaggctatgggtatagagcaggaagggcagataacagtgctaatacactgtggctca
agggggttagggcatcagatatgtagtgattatcttagggtctcagaggtagcattaaag
aagtatgggataacgctaccagatagagaactggcatgtgtacctaacaactcagaggag
ggtgaagcatacaggaaggcaatgtactctgcactcaactttgcatggagtaataggcag
atgataacacactggacaaggaaggcattcgagaaggtattcaatgctagcgagaatgat
cttaacatgcaccttgtgtatgatgttgcacacaacatagccaaggttgaggagcataag
gttgatggttcgctcaagagggttgttgtgcataggaagggtgcaacaagggcattccct
gcaggtagggaagagataccagcgaagtatagagcgataggccagccagtgctcatccca
ggatctatgggcactgctagttggatactccttgggagcccaaaggcaatggagcttaca
ttcggctctacagcacatggtgcagggaggactatgagcagggcagcagcaaagcgctca
tacactgcacaggaggttcagaagaggctagagagtagaggtatatacataaaggcactg
acaagagagggtgttgtagaggagacgccagaggcatacaaggatgttgatgctgtagca
gatgtaagccatagcgttgggatagcaaccaaggttgctaggctagtcccaataggtgtt
ataaagggatga
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integrated database retrieval system
