Candidatus Nitrosocaldus cavascurensis: NCAV_0899
Help
Entry
NCAV_0899 CDS
T05329
Name
(GenBank) tRNA intron endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
ncv
Candidatus Nitrosocaldus cavascurensis
Brite
KEGG Orthology (KO) [BR:
ncv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ncv03016
]
NCAV_0899
Enzymes [BR:
ncv01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
NCAV_0899
Transfer RNA biogenesis [BR:
ncv03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
NCAV_0899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Urease_linker
Motif
Other DBs
NCBI-ProteinID:
SPC34076
UniProt:
A0A2K5AR02
LinkDB
All DBs
Position
NCAV:complement(782366..782986)
Genome browser
AA seq
206 aa
AA seq
DB search
MRRERKAVENGGGEEEGREILAMLKDDKVIVDDPDAMEELRRKGYGDRDEKDGRYFLYMY
EALYLLYTKRMIVRRRDGDTLSFHELVSEALKHDPSIWTKFLIYRDLRSRGYVAREGFGF
GNDFRVYERGEYSIKSARYIVFGLNEGREVKIDDLSRMVEQIWSMGKEPIVAVIERRGEV
IYYSVERMRFAELKKVSIQSLDELNK
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
atgcgaagggagagaaaggcggtagagaatgggggaggtgaagaagagggtagagagata
cttgccatgctcaaggatgataaggttattgtagatgatccagatgctatggaagagttg
aggaggaaaggctatggggatagagatgagaaagatggaagatacttcctgtacatgtat
gaggcattatacctactctacaccaagaggatgattgtaagaagaagggatggggatact
ctgagtttccatgaactggttagcgaggcactcaaacatgatccaagtatatggacgaag
ttcctcatctatagagatcttagaagtagaggctatgttgcaagggaaggctttgggttc
ggcaatgattttagggtatatgagagaggtgagtatagcataaagtcagcaagatacatc
gtatttgggcttaacgagggtagggaggttaagatagatgatctcagcaggatggttgag
cagatatggagtatgggcaaagagcctatagttgctgttatagagcgtagaggagaggtc
atatactacagtgttgagaggatgcgctttgctgagttgaagaaggtctctatacaatct
ctggatgaactcaataaatag
DBGET
integrated database retrieval system
