Candidatus Nitrosocaldus cavascurensis: NCAV_1047
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Entry
NCAV_1047 CDS
T05329
Symbol
tfb
Name
(GenBank) Transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
ncv
Candidatus Nitrosocaldus cavascurensis
Pathway
ncv03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ncv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NCAV_1047 (tfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncv03021
]
NCAV_1047 (tfb)
Transcription machinery [BR:
ncv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
NCAV_1047 (tfb)
Prokaryotic type
Archaeal type
TFB
NCAV_1047 (tfb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
HTH_AsnC-type
Sigma70_r4
BRF2-like_C_cyclin_rpt
Auto_anti-p27
Cyclin_N
HTH_Crp_2
Phage_terminase
Sigma70_r4_2
HTH_11
HTH_24
A2L_zn_ribbon
Zn_ribbon_3
Ribosomal_S27e
DUF5817
Zn_Ribbon_1
Motif
Other DBs
NCBI-ProteinID:
SPC34224
UniProt:
A0A2K5ARK2
LinkDB
All DBs
Position
NCAV:complement(917078..918157)
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AA seq
359 aa
AA seq
DB search
MFTLTCKECSSNRMVQDNESGEIFCANCGYVILERSEDSSKEWRAFSNEEYEARSRAGMP
TRLAMHDMGLATVIGSKDMDYEGKALSTAMKGTIGRLRTWDSRIQVHEPMERNLRQAMSE
LDKWKDKLALNESIIERTAYIYRKALEKGLARGRSISSLVAGTLYTACRLTETPRTLKDI
ASATNLKRKDIARSYRLLISELDLHIPVIDPIKCISRIASNLSFSNDIKREKVKRKAIEI
LNKAKEAGLVTGKEPMGLAASALYIACIINGENITQKDIAEVAGVTEVTVRNRYKSLKPI
VEGKDTTNTTPITTTTTTPTTIVVTTPTTANVNTGTNANVIPNATPPTTNATTAVMYTT
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgttcacgttaacatgtaaggagtgcagtagtaacagaatggtacaggataacgaatca
ggcgaaatattctgtgctaactgtggttacgtgatattagaacgctcagaagactctagc
aaggagtggagggcattcagcaatgaagagtatgaagcaaggagcagagcaggcatgcca
acaaggttagcaatgcatgatatgggtcttgcaactgttataggctctaaagacatggac
tatgagggcaaggcattatcaacagcaatgaaaggcactataggtaggttaaggacatgg
gatagcaggattcaggtacatgaaccaatggagaggaatttgaggcaagcaatgtctgag
ttagataagtggaaggataagcttgctcttaacgagagcataatagagaggactgcatac
atatacaggaaggctttggagaaagggttggctaggggtagaagtatatcctctctagta
gcaggaacattgtatacagcatgcaggcttactgagacacctagaaccttgaaggatata
gcaagtgcaacgaatcttaagaggaaggatatagcaaggagttatagactgctaataagt
gaacttgatttgcatataccagttatagatcctataaagtgcataagcaggatagcaagt
aacctctccttctctaatgacataaagagagagaaggtgaaaaggaaggctatagagata
ctgaacaaggcaaaggaagcagggctagtaactggtaaggaaccaatgggcttggcagct
tcagcactctacatagcatgtatcattaatggtgagaatataacccagaaggatatagca
gaggtagcgggagtaacagaggtaacagtaaggaataggtataagagtttgaaaccaata
gttgagggtaaggatactacaaatactactcctataactactactacaactactcctact
acgattgttgtaactactcctactacagccaatgttaacactggtaccaatgctaacgtt
atcccaaatgctacccctcctactaccaatgctacaactgctgttatgtatacaacataa
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