Candidatus Nitrosocaldus cavascurensis: NCAV_1104
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Entry
NCAV_1104 CDS
T05329
Name
(GenBank) putative HerA helicase
KO
K06915
DNA double-strand break repair helicase HerA and related ATPase
Organism
ncv
Candidatus Nitrosocaldus cavascurensis
Brite
KEGG Orthology (KO) [BR:
ncv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncv03400
]
NCAV_1104
DNA repair and recombination proteins [BR:
ncv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Archaeal homologous recombinant proteins
NCAV_1104
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
DUF87
HAS-barrel
AAA_10
HerA_C
TrwB_AAD_bind
FtsK_SpoIIIE
Alpha_TIF
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
SPC34281
UniProt:
A0A2K5ARK3
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All DBs
Position
NCAV:966590..968197
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AA seq
535 aa
AA seq
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MSNAGNASVDGPLGFVVGEAYPYKFTFIAKRAISVGEYVVVDANSRRILGMVEHSSIRSS
IMDGVTNYHAAYEGKAIAERNVRDKSYLALVRVLGYTDELINGKVTLPSLPPEPGSMVFE
ASRDELKVFSLYGLPWIRIGSLLRNASVDVSVNLDRLASRHLAILSVTGGGKSNLLALIA
KRIAELNGTMIIFDYHGEYTDIEMSNVEVMDAKINPRYIDEAERLADLLEVREYATVQRE
VLGKALTDDVKSSTDFWAALKANIDALKDMEEQKGSKKNVQIIKACDRLQGIIDSAVRRL
GSLLDTSQRRPLDMLRPNKVNILNMIEFTEKQANIAIAYYLEEILEDRKRAERLRSGRGV
EVRSSISSNSGSGSMDSTNVKFDTPVICAIEEAHVFLPNNKDTDAKYIASKIAREGRKFG
VSLIIVSQRPRRLDQDVLSQMGSLAILRLTNPDDQRYINEASEVLSKELLEYLPSLNVGE
AILVGQWVNVPSIVKIEEVREKRVGGDISAVEQWRSSKRHSKIAKERTEDLIAID
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatgcaggcaatgcaagtgttgatggacctctaggctttgtagttggtgaagca
tacccatacaagtttacgttcatagcaaagagagcaataagcgttggtgaatacgttgtt
gttgatgcaaatagtagaaggatactaggcatggttgagcactcatcaataaggagtagc
ataatggatggtgtaactaactatcatgcagcatatgaaggcaaggctatagcagagagg
aatgttagggataagagttatctagcactggttagagttctaggttatacagatgaacta
atcaatggcaaggttacactaccttcgttgcctcctgaacctgggagtatggtgtttgag
gcaagcagggatgaactcaaggtattcagcctctatggtctgccatggataaggataggc
tccctgcttaggaatgctagcgttgatgtatcagtcaaccttgatagacttgctagtagg
catctagccatactatctgttactggaggaggtaaatcaaacctacttgcacttatagca
aagaggatagcagagttgaatggtacaatgataatattcgattaccatggtgaatataca
gatatcgagatgagtaatgtggaggttatggatgcaaagataaaccctagatacatagat
gaggctgagaggcttgctgacctgctagaggtgagggagtatgctactgtgcagagggaa
gtgctaggcaaggcattaaccgatgatgttaagagcagtactgacttttgggcagcattg
aaggcaaacatagatgcgttgaaggatatggaagagcagaagggtagcaagaagaatgtt
cagatcataaaggcttgtgataggctacagggtataatagattcagcggttaggaggcta
ggctcactacttgatacaagtcagcgtaggccattggatatgcttagaccaaacaaggtt
aacatacttaacatgatagagttcacagagaagcaggcaaacatagctatagcatactac
cttgaagagatactggaggataggaagagggctgagagattgaggagtggaagaggagta
gaggtaaggagtagtattagcagtaatagtggtagtggtagcatggattccaccaatgtt
aagttcgataccccagtgatatgtgcaatagaggaggcacatgtattcctgccaaacaat
aaggatacggatgcaaagtacatagcaagcaagatagcaagagagggtaggaagtttggt
gtatcccttatcatagtctcgcagaggcctaggaggcttgatcaggatgttctaagccag
atgggttctctagccatattaaggcttacaaacccagatgatcagaggtacataaatgag
gctagcgaggttcttagcaaagaacttctagagtatctaccatcactcaacgttggtgag
gctatacttgttggacagtgggtcaatgtaccgtctatagtgaagattgaggaggttagg
gagaagagggtaggtggagatataagtgctgttgagcagtggagatcaagcaaaaggcat
agcaagattgctaaggagaggactgaggatctaatagccatagattga
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