Candidatus Nitrosocaldus cavascurensis: NCAV_1258
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Entry
NCAV_1258 CDS
T05329
Name
(GenBank) putative SMC domain-containing protein, exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ncv
Candidatus Nitrosocaldus cavascurensis
Brite
KEGG Orthology (KO) [BR:
ncv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncv03400
]
NCAV_1258
DNA repair and recombination proteins [BR:
ncv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCAV_1258
Archaeal homologous recombinant proteins
NCAV_1258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_21
AAA_15
AAA_29
SbcC_Walker_B
T4SS
AAA_27
TolA_bind_tri
Tropomyosin
CENP-F_leu_zip
TRI5
Exonuc_VII_L
Fe-S_assembly
ABC_tran
zf-C3HC4_3
GAS
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
SPC34425
UniProt:
A0A2K5AS14
LinkDB
All DBs
Position
NCAV:1094995..1097499
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AA seq
834 aa
AA seq
DB search
MLMIDSITLVDFISHRDTTIRFGDGVTVFIGRNGSGKSSVIDGITYALYGKHTRRNNSNL
VRHGAHHSSLILEFSINGKRYKVEKRLSAKGTLESGVLYELSGGSWKMLAAGERKQFGES
MSNEIAKILGLDYDKMRVAAVIQQGEIDRIIEYKPKEFKELINNIIGIDRLDNAYELMRY
VIDGFRERLRSVYGYDDNSRDTLARDVERYEKDVEEMRRMISRIEEDVRRVVEEKVTLEK
EYEEMRGKRERFEGLKVRVSNLLNYIGERKRSLEREVEEIKATISKAEECMMFVEQEEKV
KASLDSAEEKVNRLDEEISRYKQEHTRLESLKRLVADKMTLLSNAREQLSTVERLKHVPD
ELSKVKERLQEVSYRISSSNEEMGRLKGLMECASKIEFKDGICPVCNSKVERINPLFDKN
ELKRRIQDAARELDILKREYLKLENRLKELEGYNEQLHMAKGFLEMNKIASINSIYALEE
EVNSLSREVNSINTIKSKINSLVVERNDAYDMMKEYRRRLDEINKARAFLDAKSIKNRDD
LERLRREVREREGLVGRLKIFLDKDAQTIALSMISPSPAYNIDEYAIDEYSKRLVGEIVT
LAGECKGFSEERYMKIERRLKEVERVEREREKELAGLKSRLDAITNDLERLRGTLKVLDH
AYNHTTMLERIREKAFHRNSIVARSLRSWALQHISDKASEYAKAFSIDISRIELVEEEGN
NEVNIACYGRRGLIDLASMSGGEKVAIALALRFAIAYVMGGYRLDFVIMDEPTVHLDEER
RASIVELIGLLAEGSALKQIIIITHDSEIFEDADVDHLYKFEMTDQGTVVSEVK
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgcttatgattgatagcataacacttgtagactttatatcccacagggatacaaccata
aggtttggtgatggtgttaccgtattcataggcaggaatggttctggcaagtcatctgtt
atagatggtataacatatgcactctatggtaagcatacaaggcgtaacaacagcaacctt
gtaaggcatggtgcacaccactcctccctcatactagagttctcaataaatggcaagagg
tacaaggttgagaagaggctgagtgctaaaggtactctagagtctggtgtgctctacgag
ttgagtggtggttcatggaagatgcttgctgcaggggagaggaagcagtttggagagtct
atgagtaatgagatagcaaagatacttggcttagattatgataagatgagggttgctgca
gttatacagcaaggcgagatagataggataattgagtataaacccaaggagttcaaggaa
cttataaacaacataataggaatagataggctagataatgcttatgaactcatgaggtat
gttatagatggcttcagggagaggttgagaagtgtatatggatacgatgataacagtaga
gatacactagcaagggatgttgagaggtatgagaaggatgttgaagagatgaggaggatg
atctcaaggatagaggaggatgtgaggagagttgtagaggagaaggttacattagagaag
gagtatgaggagatgagaggcaagagggagaggtttgaaggtttgaaggtaagggtaagt
aacctactcaactacataggtgagaggaagagatccttagagagggaggttgaagagatc
aaggctacaattagtaaggctgaggagtgcatgatgtttgttgagcaggaggagaaggtt
aaggcatctttagatagtgctgaggagaaggttaataggcttgatgaggagatcagcaga
tataagcaggagcatactaggcttgagtcgctgaagagactagttgctgataagatgacc
cttcttagtaatgcaagggagcagttatctactgttgagaggctaaagcatgttccagat
gaactatcaaaggtgaaggagaggctacaggaggtgagctatagaatctctagcagtaat
gaggagatgggcagattgaaggggttgatggagtgtgcatctaagattgagttcaaggat
ggcatctgccctgtatgcaacagtaaagttgagaggataaaccccttattcgataagaat
gagttgaagagaaggatacaagatgctgcaagagaacttgatatacttaagagagagtat
ttaaaacttgagaataggctaaaagagttagagggttataatgagcagttgcatatggct
aaaggcttcctagagatgaataagatagcaagcatcaacagcatctatgcgttggaggag
gaggttaactctctgagtagggaggttaatagcatcaataccataaagagtaagataaac
agccttgtggttgagaggaacgatgcttatgatatgatgaaggagtataggaggaggctt
gatgaaataaataaggcaagagcgttccttgatgcaaagagtattaagaacagggatgat
ttggagaggttgaggagagaggttagggagagagagggattagttggaaggttaaagatc
ttcttggataaggatgctcaaactattgccttatccatgatatcaccatctccagcatac
aacatagatgagtatgcaatagatgagtatagtaagaggctggttggggagatagtaacc
ctagcaggcgaatgtaaagggttctcagaggagaggtatatgaagattgagcgtaggtta
aaggaggttgagagagttgagagggagagggagaaggagcttgcaggtctaaagagtagg
ttagatgccatcaccaacgatcttgagaggctaaggggtactcttaaagtgctagatcat
gcatacaatcatacaactatgcttgagaggataagggagaaggcattccataggaatagc
atagttgcaagaagcctaaggtcttgggcattacagcatatatccgataaggcatctgag
tatgctaaagcattctcaatcgatatatcaaggatagagttggttgaggaggaaggtaac
aatgaggttaacatagcatgctatgggaggcgagggttaatagatctagcatctatgagt
ggaggggagaaggttgctatagcactagccctaagatttgcaatagcctatgtcatgggt
ggttataggttagactttgttataatggatgagcctacagtgcatcttgatgaggagagg
agggcatctatagtagaactcatagggctccttgcagagggttcagcactgaagcagata
ataatcataacgcatgatagcgagatatttgaggatgctgatgttgaccatctctacaag
tttgagatgactgatcagggtacggttgtaagtgaggttaagtga
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integrated database retrieval system
