Candidatus Nitrosocaldus cavascurensis: NCAV_1291
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Entry
NCAV_1291 CDS
T05329
Name
(GenBank) conserved protein of unknown function
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
ncv
Candidatus Nitrosocaldus cavascurensis
Brite
KEGG Orthology (KO) [BR:
ncv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ncv03016
]
NCAV_1291
Enzymes [BR:
ncv01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
NCAV_1291
Transfer RNA biogenesis [BR:
ncv03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
NCAV_1291
Prokaryotic type
NCAV_1291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
SPC34458
UniProt:
A0A2K5AS26
LinkDB
All DBs
Position
NCAV:1127557..1128978
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AA seq
473 aa
AA seq
DB search
MHIVSDLDRMIGLEVYSTATEGVKGRIRRSSNNSRSDGHYDHFMVEEVIDVDGRISISKV
RDNRHRYPLFILRKEGIDTIHALKELESKYGLRLNALGLKDANASTLQYVTSDRVLGVRR
RKRENIGSEKGDGDGEGGGEGGRGMGIKEVDEDEEEEKELSTRHCSLKFVGYLDRMLRKR
DLIGNRFTITIEIDPSDHEYLEKIKSVIMEVRARRVGNFYGYQRFGSIRPVTHLVGKAIT
KRRFREAVDTFLTYIGEYEDEQSRNVRLMLRDGLSEESIEHIPYHMDLERDLVESMIKSS
DPIRALRRLPISVRRLFVEAYQAYIFNRTLSIAIREGYDISTPSMGDICFSVDVNNKVGD
ICRFDGSRSKDGLVPAIPLVGFAFKPIGRFGTIVERVMEEEEICSKDFYIKEMQEVSVEG
GFRPSPLLLLYNTFEILSNNGGIRVRFALPKGSYATVLLREVIKPAQPTLVGF
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgcatatagtatcagatcttgataggatgataggacttgaggtgtactcaacagcaacg
gaaggggtgaagggaaggataagaaggagtagtaataatagcaggagcgatggtcactat
gatcactttatggttgaggaggttatagatgttgatggtagaataagcatatccaaggta
agggataacaggcatagataccctctattcatactaaggaaggaaggcatagatacaata
catgccttgaaggagctagagtcaaagtatgggctcaggttgaacgctcttggcttgaag
gatgctaatgcctcaaccctacagtatgttacttcagatagagtgttaggagttaggagg
aggaagagggagaatataggaagtgagaagggtgatggagatggagaaggaggaggagag
ggaggtagggggatggggataaaggaggtggatgaggatgaggaagaggagaaggagttg
agtacaaggcactgttccctcaagtttgtaggctacttagataggatgttaaggaagagg
gaccttataggtaacagattcacaataaccatagagatcgatccttcagatcatgaatac
ttggagaagataaagagtgtgatcatggaggttagagcaagaagggtagggaacttctat
ggctatcagaggttcgggagcataagaccagtaacgcatcttgtaggtaaggctattaca
aagcgtaggttcagggaggctgtggatacattccttacatacattggtgagtatgaggat
gagcagagtagaaatgtaaggctgatgcttagggatggtcttagtgaagagagcatagag
catatcccatatcacatggaccttgagagggatttggtagagagcatgattaagagtagc
gatcctataagggcgttgaggaggctccccataagtgttaggaggctattcgttgaagca
tatcaagcatatatattcaatagaacgttgagtattgctataagggaagggtatgatatc
tcaacccctagcatgggtgatatctgcttcagtgttgatgttaataataaggttggagat
atatgcaggtttgatggttctagaagtaaggatggtcttgttcctgcaataccactagta
gggtttgcgttcaagccaataggcaggtttggtacaatagttgagagggttatggaggag
gaagagatctgtagtaaggacttttacatcaaggagatgcaagaggtaagcgttgagggt
gggtttagaccatcaccactgttattgctctacaatacatttgagatactctctaacaat
ggagggataagggttagattcgctcttccaaagggcagttatgcaacagtactactaagg
gaggttataaaaccagcacagccaacacttgtaggattctag
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