Candidatus Nitrosocaldus cavascurensis: NCAV_1494
Help
Entry
NCAV_1494 CDS
T05329
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit A''
KO
K03041
DNA-directed RNA polymerase subunit A' [EC:
2.7.7.6
]
Organism
ncv
Candidatus Nitrosocaldus cavascurensis
Pathway
ncv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ncv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCAV_1494 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncv03021
]
NCAV_1494 (rpoA)
Enzymes [BR:
ncv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCAV_1494 (rpoA)
Transcription machinery [BR:
ncv03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
NCAV_1494 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
SPC34660
UniProt:
A0A2K5ASN3
LinkDB
All DBs
Position
NCAV:complement(1310274..1314122)
Genome browser
AA seq
1282 aa
AA seq
DB search
MSVAAEEVTKVIAGIKFAVWSPSEIRKYSVAEITAPETYDEDGLPVQGGLMDSRLGILEP
GQKCATCGNTSARCPGHFGHIELAEPVLHISFVDDIHLLLQVTCRGCSRLKLSSDEIAEY
KARLNSGEIHTQLVVERIKDELIEKAKKAKTCPHCGKEQYEIVFVKPTTFYEKTENGEEN
RLLPIAIRDRLINIPDDDLRLLGYNPETARPEWFVLQVLPVAPVTVRPSIILETGMRSED
DLTHKLVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHVTTYFDNEVSGIPQAHHRSGR
PLKTLSQRLKGKEGRFRGSLSGKRVDFAGRTVISPDPNLDISEVGVPEEIAKKLTIPEVV
SPWNIDRLRALIMNGPNKHPGANYIIRPDGVKIRLDYVADRSTLAESLAPGFIVERHLMD
GDIVIFNRQPSLHRISIMAHLVKVLPYRTFRLHPSVCPPYNADFDGDEMNLHVPQSVEAR
AEAKILMQVHDQLISPRYGGPIIGGIRDFITAAYLLTKDDTVLSREEFVNLAFIGGIKHD
LSALIGNSDGSRYTGKQLFSLLLPKDFNYTLISKWMKSAKTSKQPDVIIKNGMLLSGVID
KASIGAEEPDSILHRLAKDYGTSFARSFLNSLFRILTHFITHYGFSYGYDDLLLPEDARK
EIDNIIKSAYEKVYDLIRQYREGTLQPIRGLSPEETLELQIVNELSRARDRAGRTADRSL
PDSNAGVIMASTGARGSTLNIGQMTAILGQQSIRGKRIERGYQRRALPHFLPDDINPDAK
GFVKSNFRDGLNPLEFFFHAMGGREGLVDTAVRTQQSGYLQRRLINAMEHLRIEYDHTVR
DSFGNVVQFVYGEDSIDPAKSDHGSAVNIERLVNAQALIEEGEKEKASDEEIGRIVDGYA
SMLNPSIVDMLKHELMKVRLSRDGVEKVCKHVVELFEKARAEPGEAIGIVAAQSIGEPGT
QMTLRTFHFAGIKERNVTLGLPRLIELLDARKKPETPTMDIYLLPEYARSRESALQVARN
ILFTKLNDLVESAEVDVDGALHLVLDSRKMEERGCDIDTIVNALKSSKKKLNVSVDGSSM
ITIRPPAGADARTMNTLKGKILNTKIKGIPEIERVTVVKQGDEWVIQTAGSNLQKVLDVD
GVDPTRTTTNNIYEIANVLGIEAARTALVKEIMNTLEEQGLEVDIRHIMLVADVMTSKGM
LQQIGRHGVAGTKTSVLARAAFEITVPTIAEAALKGEIEPLKGVTENVIVGSTVPVGTGM
VDLYMKVGNGSASVASSDAEGG
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgcagcagaggaggttacaaaggttatagcaggtataaagtttgctgtatgg
tcaccaagcgagataagaaagtactctgtagcagagataacagcaccagagacatatgat
gaggatggattgccagtgcagggaggactcatggatagcaggttaggcatacttgagcct
ggtcagaagtgtgctacatgtggtaatacatctgctagatgtccagggcactttgggcat
atagagttggctgaaccagtactccacatatcgtttgttgatgatatccatctcttgctt
caggttacatgcagaggatgctctaggctcaaactatcatctgatgagattgctgagtac
aaggcaaggttgaacagtggggagatacatacacagttggtcgttgagaggataaaggat
gaactcatagagaaggccaagaaggcaaagacatgccctcactgtggcaaggagcagtat
gagatagtctttgtaaagccaacaacattctacgagaagactgagaatggggaggagaat
aggctactccctatagcgataagggataggcttatcaatatacctgatgatgatctaagg
cttctaggctacaacccagagactgcaagaccagagtggttcgtcctccaagttctacca
gtggcacctgttacagtcagaccatcaataatacttgagactggtatgaggtctgaggat
gatcttacgcacaagctggttgatataataagggttaaccagaggcttaaggagagtaag
gaggcaggtacaccaccactaatagtgcaggatcttgttgatctactccagtaccatgta
acaacatacttcgataacgaggtatctggcataccacaagcccatcatagatctgggagg
ccattgaagaccctctcgcagaggcttaagggtaaggaggggaggttcagaggcagtcta
tcaggcaagagggttgactttgctggaaggactgtcatctcaccagatccaaaccttgat
atatcagaggttggtgtgccagaggagatagcaaagaagttaactatacctgaggttgta
tccccatggaatattgataggcttagagcattgataatgaatgggccaaacaagcatcct
ggagcaaactacataattaggcctgatggtgtgaagataaggcttgattatgtagcagat
agaagcacacttgcagagtctttagccccagggttcatagttgagaggcatctcatggat
ggtgatatagtgatattcaacaggcagccatcactgcacaggatatccataatggcccat
ctggtcaaggtattgccatacagaacattcaggctacacccatctgtatgcccgccatac
aatgctgactttgatggtgatgagatgaacctccatgtccctcagagcgttgaggctagg
gcagaggcaaagatactcatgcaggttcatgatcagttgatatcccctaggtatggaggc
cccataataggaggaataagggacttcataacagcagcgtacctactcacaaaggatgat
acagtgctaagcagggaggagtttgttaatctagcattcataggaggtataaagcatgac
ctctcagcactaataggcaatagtgatggtagtaggtatactggtaagcagctgttctcc
ctcctcctaccaaaggacttcaactacaccttgatatcaaagtggatgaagagtgcaaag
acaagcaagcagccagatgtgataataaagaatggcatgttgcttagtggtgttatagac
aaggcatcaataggagcagaggagccagacagcatactgcatagattagccaaagactat
ggtacatcatttgcaaggtccttccttaactcactcttcaggatactaacccacttcata
acacactatggcttcagttacggctacgatgatctcctgctacctgaggatgcaaggaag
gagatagataacataataaagagtgcgtatgagaaggtttatgatcttataaggcagtat
agagaaggtacactccagcccataagaggattatcgccagaggagacactagaactgcag
atagtaaatgaactctctagggcaagggatagagcaggtagaacagcagatagatcgctc
ccagatagcaatgctggggttataatggcaagtactggggctagaggctcaacactcaac
atagggcagatgactgcaatacttggtcagcagtcaataagagggaagaggatagagaga
gggtatcagaggagagcattaccccacttccttccagatgatataaatcctgatgcaaag
ggctttgtaaagtcaaacttcagggatgggttgaatccattggagttcttcttccatgca
atgggaggtagggaagggcttgttgatactgctgtaaggacgcagcagagcgggtatctg
cagaggaggctaataaatgcaatggagcatctaaggatagagtacgatcatacagttagg
gactcatttggcaatgtagtgcagtttgtgtatggagaggatagtatagacccagcaaag
agtgaccatggtagtgctgttaacatagagaggcttgttaatgcacaggcacttatagag
gaaggagagaaggagaaggcaagtgatgaggagataggtagaatagttgatggatatgct
agcatgctcaacccaagcatagtggatatgcttaagcatgagttgatgaaggttagacta
agcagggatggagtagagaaggtatgcaaacatgttgtagaactctttgagaaggctagg
gcagaaccaggagaggctataggtatagttgctgcacaatcaataggagagcctggtaca
cagatgacccttaggacattccactttgctggtataaaggagaggaatgtaaccctagga
ttgccaaggctcatagagttgttagatgcaaggaagaagccagagacaccaaccatggac
atatacctattgccagaatatgcaaggtcaagggagagtgcacttcaagtagcaaggaac
atactcttcacaaagctcaacgatcttgttgagagcgctgaggttgatgttgatggtgca
ctccatctagttcttgattcaaggaagatggaggagagagggtgcgatattgataccata
gttaatgcactcaagtcatccaagaagaagcttaacgttagtgttgatggtagcagtatg
ataactataagaccccctgcaggagcagatgctagaactatgaacacactcaagggaaag
atactgaacacaaagataaagggcatacctgagatagagcgtgtaactgtagttaagcag
ggcgatgagtgggttatacagactgcaggctcaaacctgcagaaggtccttgatgttgat
ggagttgatcctactagaacaacaacaaacaacatatatgagatagcaaacgtgcttggc
atagaggctgctaggacagcacttgtaaaggagataatgaatacactggaggagcagggt
ctggaggttgatataaggcatataatgcttgttgctgatgtaatgacaagcaaggggatg
ctccagcagataggtaggcatggtgttgctggaaccaagactagtgtacttgcaagggca
gcattcgagataacggttccaactatagcagaggcagcactcaaaggggagatagaaccc
cttaagggtgttacagagaatgttatagttggttcaactgtgcctgtaggtactggcatg
gttgatctgtacatgaaggttggtaatggttcagcctcagtagcatcctcagatgcagaa
ggtggttag
DBGET
integrated database retrieval system
