Candidatus Nitrosocaldus cavascurensis: NCAV_1687
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Entry
NCAV_1687 CDS
T05329
Symbol
pcn
Name
(GenBank) DNA polymerase sliding clamp
KO
K04802
proliferating cell nuclear antigen
Organism
ncv
Candidatus Nitrosocaldus cavascurensis
Pathway
ncv03030
DNA replication
ncv03410
Base excision repair
ncv03420
Nucleotide excision repair
ncv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCAV_1687 (pcn)
03410 Base excision repair
NCAV_1687 (pcn)
03420 Nucleotide excision repair
NCAV_1687 (pcn)
03430 Mismatch repair
NCAV_1687 (pcn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncv03032
]
NCAV_1687 (pcn)
03400 DNA repair and recombination proteins [BR:
ncv03400
]
NCAV_1687 (pcn)
DNA replication proteins [BR:
ncv03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
NCAV_1687 (pcn)
DNA repair and recombination proteins [BR:
ncv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
NCAV_1687 (pcn)
MMR (mismatch excision repair)
Other MMR factors
NCAV_1687 (pcn)
TLS (translesion DNA synthesis) factors
Other TLS factors
NCAV_1687 (pcn)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCNA_N
PCNA_C
Rad1
Rad9
DUF5748
Motif
Other DBs
NCBI-ProteinID:
SPC34850
UniProt:
A0A2K5AT80
LinkDB
All DBs
Position
NCAV:1482929..1483798
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AA seq
289 aa
AA seq
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MLIARSKSAEEWKTIVSAISTIVEEATFEATSEGISFRGMDPSHVALIDVQLLNSAFEYY
KCDGSIRFAVRVDEFLKLLKRAGKEDSIEVSIGGAGAVGESRRERGEEEVEEEEEREVTA
LEESKEKEMVALASDENMLSIKMVSKYTRQYKMRLIESTSSSTPLPKITFNTKVVMKMAQ
FIEALKDVEIVSDYITIRCDGNMLQLIGKGDSGDAVITFNKGDEGVEEMSSNGESNATYS
LEYLGSIVKAVDNADSIVIEYSTRMPLRLEFKMPYMCRIYFYLAPRVEA
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgctaatagcaaggagcaagagtgcagaggaatggaagaccatagtatctgcaataagc
accatagttgaggaggctacattcgaggctaccagcgagggcatatcgttcagaggtatg
gaccctagccatgttgcgctcatagatgtgcagttgctcaactctgcatttgagtactac
aagtgtgatggtagcataaggttcgctgttagggtagatgagttcctaaagttactgaag
agggcaggtaaggaggatagcatagaggttagcatagggggtgcaggtgctgttggggag
agcaggagggagagaggagaggaggaggttgaagaggaagaggaaagggaggttacagca
ttagaagagagtaaagagaaggagatggttgctcttgcttctgatgagaacatgctctct
ataaagatggtgagcaagtacacaaggcagtacaagatgaggttgatagagagtacttct
agttcaacaccattaccaaagataaccttcaacacgaaggttgttatgaagatggctcaa
ttcattgaggcattgaaggatgtagagatagtctcagattacataacgattaggtgtgat
ggtaacatgctacagttgataggcaagggagatagtggggatgctgtaatcacattcaac
aagggggatgagggggttgaggagatgagtagcaatggggagagtaatgctacgtacagc
ctagagtaccttgggagcatagttaaggcagtagataatgcagatagcatcgttatagag
tactctacaaggatgcctttgaggcttgagtttaagatgccctacatgtgcaggatatac
ttctaccttgcaccaagggttgaggcttag
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