Nostoc carneum: NIES2107_20120
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Entry
NIES2107_20120 CDS
T10358
Name
(GenBank) WD-40 repeat-containing protein
Organism
ncw Nostoc carneum
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_IFT122_1st
WDR55
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
nSTAND1
Beta-prop_EIPR1
Beta-prop_Vps41
Ge1_WD40
Beta-prop_SCAP
RMC1_N
Beta-prop_IFT140_1st
eIF2A
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_ELP1_1st
Beta-prop_DCAF12
PROPPIN
WD_LRWD1
Beta-prop_SPT8
Mala_s_1-like
TPR_12
Beta-prop_NUP159_NUP214
AAA_16
NACHT
RsgA_GTPase
ATPase_2
AAA_23
Beta-prop_IP5PC_F
nSTAND3
AAA_22
AAA_29
Vgb_lyase
DHR-2_Lobe_A
Motif
Other DBs
NCBI-ProteinID:
BAY30168
LinkDB
All DBs
Position
2516160..2521046
Genome browser
AA seq
1628 aa
AA seq
DB search
MQEAHRLETDNENSVQELAWAIATSQGEFSLILALCNAGSLQKAFSQRLQASCSQQIREI
VLDKSVKTFFQTIQNSLGEEQPQALIVSGLESVTHLEQVLTAANQVREEFRKNFHFPLVV
WVTDEVLQKLMRLAPDLHSWATTVEFAIATDDLINFIQQTADDVFTKVLEAGAGRYLDST
ALNLQVGSPRRIELESARIELQNRKVALKPELEASLEFVLGRAFSGSMEQSRQHYERSLK
LFTEQSLSLSTLERQGCVHYSLGVWWGTYAVLHHAEQNNAYRQAEAYLQQCIQVFEQANR
QDLVAKFINALGLTLQQLQQWEELETVANKALALHQTYPNQFKLARAYGFLAEVAIAKTA
WLEAKQAAEQALYLVDTVQIDESEAQSPAIKADLDWEKSYHRGWYLFALARSQSALNQPE
AAIQTLENARAETKAQYDPQLYIHILAELRDTYFKKGEYFTAFHIKQQQRSIEQQYGFRA
FIGAGRLQAQQTVNNPALPSVEQQTTIATEIAASGRQQDIDRLIERMGRSDHKLTVIYGQ
SGVGKSSILQAGLIPTLKQKSIGTRDVLPVLQQVYTDWTRELGNRLQEALSDLIPSNHCY
AIEGAKAIFKQLHHNDADNLLTVLIFDQFEEFFFVYRDPKQRQSFYNFLNECLDIPFVKI
ILSLREDYLHYLLECNNRLADFDVISNNILDKNILYYLGNFSINDTKLIINNLIIKTQLF
LEESLIDSLLRDLSRDLGEVRPIELQVVGTRLQTEKIIKLKQYQQFGPKEKLVERFLEEI
VKDCGSENERAAQLILYLLTDENNTRPLKTLAELAKDLAVEAHKLDFLIEMLVGSGLVFR
IPESPNDRYQLVHDYLVQFIRKQRGAEILAELEKEKEQRKLAEARLNQVLRRRKIDIVVM
LLLATMAVTIAMLWWQADLQKRVAIRQTLLAEKSETNFKISNIAASSTVLFASNKEFDAL
LESLRAWKSLKQSEDIQADTKMRVVTALQQAVYGIKEKNRLEGHEDIVWGVTFSPDGQLL
ASGSTDQTVKVWRTDGTLLQTLRGHSNAVTSLSFSPDGQTLASASLDKTVKIWHKNVLTG
LFDPEPYTNLQGHGDWIYSVSFSPDGEMLATGSKDATIKLWRKDGTLLKILRGHQGWVNW
LTFSPDGKFIASASEDKTVKIWRPDGSLVTTLQGHRKGVTAVAFSPNGQVLVSGGRDQII
QIWHKERNSNKNSFDFRPGKTLQEHHKKIWSLNFSPDSQKFASGSDDNTINLWSATGSLL
NTFRHSDSVASVAFSPDNKLLASASYDKSVKLWRLDAPAIPVLTGHTRRVLSVAWSPDGQ
MLASGSRDHTVKLWRREARNGAVETKLYKTLLGHTDKVPSVSFDPLGEILASASYDKTVK
LWRRDGTLIRTLQGHTDSVMSVNFSPDGQLLASASKDKTVKLWHRDGRLLTTLVGHNGWV
NSVNFSPDGQLLATASDDKTIKLWRRDGTLLKTFSPQESWVLGVSFSPTEQLLASASWDN
TVKLWRQDGKLLKTMLKGYSDSVNAVTFSPNGELLAAASYDKTVKLWSREGKLIQILTGH
QSAVLTVSFSPDGQTLASAGDDDTIILWNLNLDDLVQRGCHWVSDYLKHDRNVDESDRHL
CDDIYNKK
NT seq
4887 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaagcgcacaggctggaaacggataacgaaaattctgtacaagaattagcatgg
gcgatcgcaacttctcaaggagaattttctttaattttggcgctttgtaatgcagggagt
ttgcaaaaagctttcagccaacgcttacaagcatcttgttcacaacaaattcgggaaata
gttttggataagtctgtcaaaacattttttcagactatccaaaactcactgggtgaagaa
caaccacaagcattgatagtatctggtttagagtctgtcactcaccttgagcaagtgttg
acagctgctaaccaagtaagagaagaatttcgcaaaaattttcatttccccttagtggtt
tgggtaacggatgaagtattgcaaaaactgatgcgattagcaccagatttacatagttgg
gcgacaacagttgaatttgcgatcgcgacagatgatttaattaatttcatccaacaaact
gctgatgatgtttttaccaaagtattagaagctggcgcaggaagatatctcgacagtacc
gcgctaaatttgcaagttggttcaccacgtcgcattgaattagagtcagccagaattgaa
ctgcaaaatcgcaaagttgcattaaagccagagttagaagcaagtttagaatttgtgcta
ggtcgagctttttctggttcaatggaacagtcgcgacaacattacgagcgcagtttaaaa
ctttttaccgagcaatccttatctctgtcaaccctagaacgtcagggttgtgtacattac
tcccttggtgtgtggtggggtacatacgcagtattacatcatgctgaacagaataatgct
tatcgtcaggccgaagcttacttacaacaatgtattcaggtatttgagcaagctaatcgc
caagacttagtagctaaatttatcaacgctttggggttaacactacaacaactccagcaa
tgggaagaattagaaactgttgctaacaaagcattagcattacatcaaacctaccccaat
caatttaaactagcgagagcttatggatttttggctgaagtcgcaattgcaaaaacagct
tggctagaagcaaaacaagcggctgaacaagcgctttatcttgtcgatactgtgcaaata
gatgagtctgaagctcaatctccagcaatcaaagcagatttagattgggagaagtcctat
catcggggttggtatttatttgcgctagcgcgatcgcaatctgcactcaatcaaccagaa
gcagcaatacaaactttagaaaatgctagagccgaaactaaagctcaatacgatccacag
ctttacattcacatattagctgagttacgcgacacctattttaaaaaaggtgaatatttt
acggcatttcatattaaacaacagcagcgttcaattgaacagcagtatggtttccgtgct
tttattggtgcaggtagattgcaagcacaacaaacggtgaataaccctgctttaccatcc
gttgaacaacaaacaactatagctacagaaattgctgcttctggaaggcaacaagatatt
gatcgcctgatagaacgcatgggtcggtctgaccataaactaacagtaatttatggacaa
tccggtgtaggcaaaagttcaattttacaggctggtttaataccaaccttaaaacaaaaa
tcgattggtactcgagatgttttacctgttttacaacaagtttatactgattggactcga
gagcttggtaatcgtttacaagaagcgctctctgatttaattccttccaatcattgttac
gcaatagaaggtgcaaaagctatcttcaaacaattgcaccacaatgatgctgataaccta
ctcacagttcttatatttgatcaatttgaagaatttttctttgtttatagagatccaaaa
caaagacaatctttttataattttttaaatgaatgcttagatataccttttgtaaaaata
atcttgtcattacgtgaagattatttacattacttgttagaatgtaataatcgccttgca
gatttcgatgttatcagcaacaatattttagataaaaatattctttactatttaggaaac
ttttcaatcaatgacactaaattaattattaataatttaataattaaaactcaacttttt
ttagaagaatcattaattgatagtttgttaagagatttatctagagatttaggggaagta
cgcccaattgaattgcaagtagtaggaacaagactacaaactgaaaaaatcataaaatta
aaacaatatcagcaatttgggccaaaagaaaaattagttgagcgttttttagaagaaatt
gttaaagactgtggttctgaaaatgaacgtgcagcccaactaattttgtatttattaacg
gatgaaaataataccagacctctcaaaactcttgctgagttagcaaaagatttagctgta
gaagctcataagttagattttttgatagagatgttagttgggtcaggtttagtttttcgt
ataccagaatctcctaatgaccgttatcaactagtacatgattatctagtgcaatttatc
cgaaaacaaagaggagcagaaatactagcagaattagaaaaagagaaagaacaacgtaag
cttgctgaagctagacttaatcaagttctaagacggcgaaaaatcgacatagttgtaatg
ctattattagcaactatggcggtaacaatagcaatgttatggtggcaggcagatttacaa
aaaagagtcgccattcgccaaactttactagcagaaaaaagcgaaaccaattttaaaata
agtaatatcgctgcttctagtacagttttatttgcctctaacaaagagtttgatgcctta
ctagaaagtttgcgggcttggaaaagcctcaaacagtcagaagatattcaagcagataca
aagatgcgagttgtcacagccctacaacaggctgtttatggcatcaaagaaaaaaatcgt
ttagaggggcacgaagatatcgtctggggtgtcactttcagcccagacggtcaattattg
gcttcaggtagtacagatcagactgtaaaagtctggcgaactgacggaactttactccaa
actctcaggggtcatagcaacgctgttactagcttaagttttagtccagatggtcaaacc
ttagcttccgccagtctggataaaaccgtaaaaatttggcataaaaatgtacttacaggc
ttatttgacccagaaccatacacaaacttgcaagggcatggagattggatttatagcgtc
agtttcagcccagatggtgagatgttagctactggtagtaaggacgcaacaattaaactc
tggcgcaaggatggtactttattaaaaattctcaggggacatcaaggatgggttaactgg
ttaaccttcagtccagatggaaaatttattgcttcagcaagtgaagacaaaactgtcaaa
atttggcgaccagatgggagtttagttaccactttgcagggacatcgcaagggtgtaact
gctgtagctttcagccccaatggtcaagtactggtgtctggcggtagagatcagatcata
caaatttggcacaaagagcgtaatagtaataaaaacagctttgattttcgccctggcaaa
actttgcaggaacatcataaaaagatttggagcctgaattttagccccgatagtcaaaaa
tttgcttctggcagtgacgataacacaatcaatctctggagcgccacgggtagcttactc
aacacctttagacatagtgattctgttgctagtgtggctttcagcccagataacaaactg
ctagcatcagctagttatgataaaagcgtcaagttgtggcgtttagatgctccagcaata
cctgttctcacaggtcatacgagaagagttttaagcgtagcctggagtccagatggtcaa
atgttggcttccgggagtcgtgatcatactgtgaaactgtggcgacgtgaagctagaaat
ggagcggtagaaactaaactctacaaaactctgctcggccacacagataaagttcccagt
gtgagttttgatcccttaggtgaaatattagcttcagccagttatgacaaaactgtcaaa
ctttggcggcgcgatggaactttaatcaggacgctacaggggcatactgatagtgtgatg
agcgtcaattttagtccagacggacagttgttagcctcagcgagtaaagataagacagtg
aaactttggcatcgtgatggtcgcttgctgacaactttagtaggacataatggttgggtg
aatagtgtcaatttcagcccagatggtcagcttctagcaactgcgagtgacgacaaaacc
atcaaactctggcgcagggatgggactttgttgaaaactttttcgcctcaagagagctgg
gttttaggtgtcagctttagccccactgaacagttactagcttctgctagctgggataac
actgtgaagttatggcggcaagatgggaagttgttgaaaaccatgttaaaaggctatagc
gatagtgttaacgctgttaccttcagccccaatggagaattgcttgctgctgctagttat
gacaaaacagtcaaactctggagccgtgagggtaaactgattcaaatcctcactgggcat
cagagtgctgtattaactgtcagtttcagtcctgatggtcaaacattggcctctgctggc
gacgacgacacaattattctgtggaatttgaatcttgatgatttagtacaaaggggttgt
cattgggttagtgattatctcaagcacgaccgcaatgttgacgagagcgatcgccatctc
tgtgacgacatctacaacaaaaaataa
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integrated database retrieval system