Nostoc carneum: NIES2107_42840
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Entry
NIES2107_42840 CDS
T10358
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ncw Nostoc carneum
Brite
KEGG Orthology (KO) [BR:
ncw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ncw03016
]
NIES2107_42840
Enzymes [BR:
ncw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NIES2107_42840
Transfer RNA biogenesis [BR:
ncw03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NIES2107_42840
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
Motif
Other DBs
NCBI-ProteinID:
BAY32395
LinkDB
All DBs
Position
complement(5246852..5248903)
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AA seq
683 aa
AA seq
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MEKGTLVEFRVQGDRRLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYTVTGQTFKPSEI
SSFLEQVKPYLDPSSLEVAWELLVEDGETVTPVEMANLLFSQTDAPLCYAAHCLLSEDKL
YFKQKGDAYEPRTTTQVAERKHQLEVEALKARGQQEFLARVEQALTGETVEWQRHDRQRL
EAIEKYAALLADVVRMGVNYDSLSRAYPPPAPVLETMTMLGRAATPQGALQLLVDLGWWS
PNENLFLRRSSIPVQFPSKVLEVAQQRMDSPPSDLDTNRLDLTHLKVYTIDDESTTEIDD
GLSWESLAEGRERLWVHIADPTRLLVPEDELDLEARKRGSTVYLPTGMIPMFPEVLATGP
MSLVQGKVCCALSFGIILDETGQVADFSIHPSLIKPTYRLTYEDVDEMLELGVQAEPEIA
AIAMWAQRRKNWRYAQGAISINMPEAMIKVKGDEISIDILDDSSSRQLVAEMMILAGEVA
ARYGKVHQIPLPFRGQPQPELPPEQELLQLPAGFVRACAMRRCMPKSEMSITPVRHAGLG
LDTYTQATSPIRRYSDLLTHFQLKAHLRGEVLPFSAEQLKEVMMTVTSITQEVTMVERQT
NRYYALEYLRRYPDQVWQVTVLMWLREDSNLALILLEDLGLQLPMSFRRSVNLGEQLLVK
VSLADPQKDMIHFQEIIYQEALN
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
gtggagaaggggacgctagttgaatttagggttcaaggcgatcgccgtctgggagtggta
gaccgcccagatggcaagacccgctggtttgtggtagatgaacgcggtcaatcccacagc
ctcgcgcctagacaaattacttatactgttaccggacaaaccttcaagccgtctgagatt
agcagctttttagagcaggtcaagccatatctcgacccatctagcttggaagtcgcctgg
gaattattggttgaggatggagaaacagtcactccagtggaaatggcgaatctgctgttt
tctcaaacagacgcaccactttgttacgccgcccattgcttgttatcagaagacaaactg
tatttcaagcaaaaaggcgatgcttatgaaccgcggacaaccactcaggtagcagaacgc
aaacaccagctagaagtagaagccctcaaagctagaggacagcaggaatttttggcgcgc
gtagaacaagccctaacaggcgaaactgtagaatggcaacgccacgatcgccagcgctta
gaagcaatcgaaaaatatgcggccctgctagctgatgtagtgcggatgggagtaaattat
gattccctgtctcgggcttatccgccaccggcaccagtattagaaaccatgactatgctg
ggacgagccgcaactccccaaggtgcattacaacttttggtagatttgggttggtggagt
cccaacgaaaacttgttcttgcgtcgttcatccattccagttcagtttcctagcaaggta
ttagaagtggcgcagcagcgtatggattctccaccgtccgatctagatacaaatcgccta
gatttgactcacctaaaggtgtacacaattgatgatgaaagtactacagaaattgacgat
ggtctaagttgggaatcactagctgaaggacgagaacgtttgtgggtacatattgctgac
cccacccgtttattagtgccagaagatgaattagacctagaagccaggaaacggggaagt
acagtttatttgcctacagggatgattcccatgttccctgaagttttggcaactgggccg
atgagtctggtacagggaaaagtttgttgcgccctgagttttggcattattttagatgaa
actgggcaggtagcagattttagtattcatcccagcttaattaagccaacataccgcctc
acctacgaagatgtagatgagatgctggaattaggcgtacaagcagaaccagaaattgct
gcgatcgccatgtgggcacaacgacgcaaaaattggcgttacgcccaaggtgccattagc
atcaatatgccagaggcgatgatcaaagtcaaaggcgacgagattagcattgatatttta
gatgattcttcatcacggcaactcgtagctgaaatgatgattttagctggtgaagtcgca
gcacgctacggtaaagttcaccagatccctctaccttttcgcggtcagccacagccagaa
ttgcccccagaacaggaattactccagttaccagccggatttgttcgtgcctgtgccatg
cgccgctgtatgcccaaaagcgaaatgagtattaccccagtacgtcatgctggtttaggt
ttggatacctatactcaagcgacttccccaatccgccgctacagcgatttgctaactcac
tttcaactgaaagcccatttgcgcggtgaagttttacccttctccgccgaacagctgaaa
gaagtaatgatgaccgtcaccagtatcacccaagaagtgacaatggtagaacggcaaact
aatagatattacgctttagaatatttacgtcgttatccagatcaagtttggcaggtaaca
gtcttgatgtggctgcgagaagatagcaatttagcactaattctcttagaagatttgggt
ttacaattgccaatgtctttccgccgttcggtaaatctaggcgaacagttattagtgaaa
gttagccttgccgacccacaaaaagatatgattcatttccaagaaatcatttatcaagaa
gcactgaattaa
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