Nostoc carneum: NIES2107_43560
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Entry
NIES2107_43560 CDS
T10358
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ncw Nostoc carneum
Pathway
ncw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES2107_43560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncw03019
]
NIES2107_43560
03016 Transfer RNA biogenesis [BR:
ncw03016
]
NIES2107_43560
Enzymes [BR:
ncw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NIES2107_43560
Messenger RNA biogenesis [BR:
ncw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NIES2107_43560
Transfer RNA biogenesis [BR:
ncw03016
]
Prokaryotic type
tRNA degradation factors
NIES2107_43560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
KH_KhpA-B
KH_2
aRib
Motif
Other DBs
NCBI-ProteinID:
BAY32467
LinkDB
All DBs
Position
complement(5334770..5336926)
Genome browser
AA seq
718 aa
AA seq
DB search
MTEVDKSISFDGRDIRLKVGLLAPQAGGSVLIQSGDTAVLVTATRSQAREGIDFLPLTVD
YEERLYAAGRIPGGIMRREGRPPEKTILTSRLIDRPLRPLFPSWLRDDLQIVALTLSMDE
QVPPDVLAVTGASIATLIAQIPFNGPMAAVRVGLVGDDFVINPTYAEIEAGDLDLIVAGS
PDGVIMVEAGANQLPERDIIEAIDFGYEAVRDLIKAQQDLVAELGLEIVKGEPPEADPTL
EQFISDRASEEIKKILAQFELTKPERDAALDVVKENIANAIAELPEEDPVRVATAANSKA
LGNTFKEITKHFMRRQIIEDNVRVDGRKLDEVRPVSCLVDVLPKRVHGSGLFNRGLTQVL
SACTLGTPGDAQNLNDDLQTDQSKRYLHHYNFPPFSVGETKPMRAPGRREIGHGALAERA
LLPVLPPKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIK
EGDEVRVLTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKISGLSLDIIAQAVHQAKSAR
LHILDKMLQTIDTPRTETSPYAPRLLTIKIDPDMIGLVIGPGGKTIKGITEETGAKVDIE
DDGTVTISAVDESKAKKARNIIQGMTRKLHEGDVYVGRVTRIIPIGAFVEFLPGKEGMIH
ISQLADYRVGKVEDEVAVGDEVIVKVREIDNKGRINLTRLGIHPDQAAAAREAAAVNR
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagttgataagtcaatatcctttgacggacgggatattcgactgaaggttggc
ctactagctccccaggctggtgggtcggttttgatacaatcaggggatacagctgttttg
gtaacagctacgcgatcgcaagccagagaaggcattgattttcttcccctcacagtagat
tacgaagaaagactgtatgctgcgggtaggattcccggcgggatcatgcggcgtgaaggt
cgtcctccagaaaaaacaattcttactagccgtctgatagaccgtcccctgcgtccgctg
ttcccttcatggttgcgcgatgacttgcaaatcgtcgctttgacattgtcaatggatgag
caagtaccccccgatgtgttagctgtgacaggtgcttcaattgctaccctgattgcccaa
attccctttaatggcccaatggcagcagtaagggtaggcttagtaggtgatgattttgtc
attaacccaacctacgcagaaattgaagctggagacctagatttgatagtagcgggttca
ccagatggggtaatcatggtcgaggcgggagccaaccagttaccagagcgcgatattatt
gaggcaattgattttggctacgaagctgtacgggatttaatcaaagcacaacaagattta
gttgcagaactaggtctagaaattgtcaaaggcgaaccgccagaagcagacccaacatta
gagcagtttattagcgatcgcgctagtgaagagattaagaaaattctcgcgcaatttgaa
cttactaagccagagcgcgatgcagctttggatgtagttaaagaaaatattgccaatgcg
atcgcggaactccctgaagaagacccagttcgcgttgctacagccgccaatagcaaagcc
cttggtaacaccttcaaggaaattaccaaacacttcatgcgccgtcaaatcatcgaagac
aacgtccgcgttgatggtcgcaaactcgatgaagtgcgtcctgtttcttgtttagttgat
gttttaccaaagcgcgtccacggtagcggtttgtttaatcgcggactcactcaagtatta
tccgcctgtacccttggtactcccggagatgcccaaaacctcaacgatgacctgcaaaca
gaccaatctaaacgttacttacaccattacaacttcccacccttctcagttggagaaact
aagccgatgcgcgccccaggacggcgggaaatcggtcacggggcactcgcagaaagagcg
ctgttaccagtgctacctcctaaagaacaattcccctacgtaattcgtgtagtatcggaa
gtactctcttccaacggttccacatcaatgggttcagtctgtggttctaccctagcgtta
atggatgctggtgtaccaattctcaagcccgtcagcggtgcggcgatgggtttgattaaa
gaaggtgatgaagtccgcgttctcaccgatatccagggcattgaagactttttaggcgac
atggactttaaagtcgctggtacggatacgggaattactgccttacaaatggacatgaaa
atttccggtctgtcattggacattattgcccaagcagtccatcaagctaagtcagcccgc
ttgcacattttagacaaaatgctgcaaaccatcgatacaccacgcacagaaacttcaccc
tatgcgccacgcttattgaccatcaagattgatcctgacatgattggtctggtgattggg
cctggaggtaagaccattaaaggcattactgaggaaacaggtgcaaaagtggacatcgaa
gacgatggcaccgtcacgatttctgctgtggatgaaagtaaggcgaagaaagctagaaac
atcatccaaggcatgacccgtaaattgcacgaaggtgatgtctatgtgggacgagtaact
cgcattatacctattggtgcctttgtggaatttctgcctggtaaagaaggcatgatccac
atttcccaactagctgactaccgcgttggcaaagttgaagatgaagtggccgtaggcgat
gaagtgattgtcaaagtgcgcgaaattgacaacaaaggtcggatcaaccttacacgttta
ggtatccatcctgaccaagcagctgcagcgcgggaagcagcagcagtaaatcggtaa
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