Nostoc carneum: NIES2107_47270
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Entry
NIES2107_47270 CDS
T10358
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ncw Nostoc carneum
Pathway
ncw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES2107_47270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncw03019
]
NIES2107_47270
03400 DNA repair and recombination proteins [BR:
ncw03400
]
NIES2107_47270
Enzymes [BR:
ncw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIES2107_47270
Messenger RNA biogenesis [BR:
ncw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES2107_47270
DNA repair and recombination proteins [BR:
ncw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NIES2107_47270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
BAY32833
LinkDB
All DBs
Position
5790167..5792329
Genome browser
AA seq
720 aa
AA seq
DB search
MLQYPNLEQALKYHFGYDRFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALLKKG
LTVVVSPLIALMQDQVEALRNNNISATFLNSSLNAYKVRSREEAILSGKVKLLYVAPERL
LSERFLPFLDLVNHQVGISTFAIDEAHCVSEWGHDFRPEYRQLRSLRQRYPNIPAVALTA
TATDRVRSDIIQQLGLKQPSIHIASFNRQNLYYEIRSKSKYAYAELLELIRETQGSVIIY
CLTRKKVDELTFKLQNDKISAIPYHAGLTDDERTKNQTRFIRDDVRVIVATIAFGMGINK
PDVRLVVHFDLPRNIESYYQESGRAGRDGEPSRCTLFFNYGDIKTIEWSINQKTDQQEQL
IAKQQLRQMIDYAEGTDCRRTIQLGYFGERFAGNCGNCDNCRYPKPMQDWTIEAMKFLSC
VARCKERFGMLHIIDVLRGGKSQKILQNEHDKLSTYGIGKDRTVDEWRMLGRSLLHQGLL
EQTTDGYSVLKLNALSWEVMRRQRTVNLAVSAVQKVTWEETSEKAVEVELLMQRLRSLRK
QLADEQSVPPYVVFQDSTLKLMAQVQPTTLSEFAKLSGVGSHKLAQYGDKFLAEIRAYRQ
EQGVIDVVVNEKPAFGFRLPSTTELLTLQLHQRGLTVAEIAAQRNLRSTTIVGHLVDLVE
NNQPVDLNQLVPLERQKKIWQVLEVLGDISLTPIREQLGENYTYDEIRLVRGRWRREKRK
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgcttcagtatccgaatctcgaacaagcgctaaaatatcacttcggttatgaccgattt
cgtccgggacaacggcaaattatcgaagatgcgctgcaaaatcgggatttaatggtggtg
atgcctacgggtgggggtaagtctttgtgctttcagttaccagcgctgttaaagaaaggt
ttgacggtggtggtgtctcctttgatcgctttgatgcaagaccaggtggaggctttacgg
aataataatattagcgcgactttcctcaatagtagtttgaatgcttataaggtgcgatcg
cgtgaggaagcaatcctcagtggtaaggtgaaattactttacgtggcaccggaacggctg
ttgagtgaaagatttctgccgtttctcgatttagttaatcaccaagttggaatttctacc
tttgcaattgatgaggcgcattgtgtctcggaatggggacatgatttccgtccagaatat
cggcaattgcgatcgctacgccaacgttaccctaatattcctgctgtcgccctgactgcg
acagctaccgatcgcgtccgcagtgatattatccaacaactagggttaaagcaaccgagt
atccacattgcgagttttaaccgtcaaaatctttattatgaaatccgttctaaatctaaa
tatgcttacgcagagttattagaattaattcgtgaaactcaaggttcggtaattatttat
tgtttgactcgtaaaaaagttgacgaactaacttttaaattgcaaaacgataaaatttct
gccataccttatcatgcgggtttaactgacgacgaacgcaccaaaaatcaaacccgattt
attcgggatgatgtgcgggtaattgtcgccactattgcgtttggtatgggaattaataag
ccggatgtgcgcttggtggttcactttgatttaccacgcaatatagaaagttactatcaa
gaatccgggagggcgggtagggatggcgaaccttcgcgctgtacgctgttctttaattat
ggtgatattaaaactattgaatggagtattaaccaaaaaaccgatcagcaagaacagttg
attgccaaacaacaattgcggcaaatgatagactatgccgaaggtacagattgtcgtcgg
acgattcaactaggttattttggcgaacgctttgcgggtaattgcggtaactgcgataat
tgccgttatcccaaaccgatgcaagattggacaattgaagcgatgaaattcttatcttgc
gtggcgcgttgtaaagaaagatttgggatgctgcatattattgatgtgctgcggggtgga
aaaagccagaaaattctgcaaaacgaacatgataagctttctacctacggtattggtaaa
gatagaactgtggatgaatggcgaatgctggggcgatcgcttttgcaccaaggtttactg
gaacaaaccaccgatggttactcggttttgaagctgaacgccttgagttgggaagtgatg
cggcgacaacgtaccgttaatttagctgtgtcagcagtgcaaaaagtgacttgggaagaa
actagcgaaaaagctgttgaggtagaactactcatgcagagattgcgatcgctaagaaaa
cagctagctgatgaacaatctgtaccaccctacgttgtttttcaagattctactttgaaa
ttaatggctcaggtacaacccacaaccctcagcgaatttgccaaactttctggtgtcggt
agtcacaaactcgcccaatatggtgataaattcctggcagaaattcgcgcttatcgtcaa
gaacaaggtgtcatcgatgtagtggtgaatgaaaaacccgcttttggttttcgcttacct
tcgactacagaattattaacattacaattgcatcaacgcggtttaactgttgctgaaatt
gccgcgcaaagaaatcttcgttctactacaattgtgggacacctagtagatttagttgaa
aataatcaacctgtagacttaaatcagttagtgcctttagaacgacaaaaaaagatttgg
caagtcttagaagtgctaggtgatatttctctcacccccatccgcgaacaactgggtgag
aactatacctatgatgaaattcgcttagtgcggggaagatggcgcagggagaaaaggaag
taa
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