KEGG   Nostoc carneum: NIES2107_50460
Entry
NIES2107_50460    CDS       T10358                                 
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
  KO
K03090  RNA polymerase sigma-B factor
Organism
ncw  Nostoc carneum
Brite
KEGG Orthology (KO) [BR:ncw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ncw03021]
    NIES2107_50460
Transcription machinery [BR:ncw03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     NIES2107_50460
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4 Sigma70_r3 Sigma70_r4_2 HTH_Crp_2 HTH_24 HTH_3 HTH_23 HTH_17 HTH_Tnp_4 KORA HTH_Tnp_ISL3 HTH_8 Sigma70_ECF MarR_2 HTH_11 Tri-helical HTH_AsnC-type HTH_30 Xre-like-HTH HTH_31 GerE HTH_28 AbiEi_4 HTH_37 Sigma54_DBD
Other DBs
NCBI-ProteinID: BAY33151
LinkDB
Position
complement(6152232..6153008)
AA seq 258 aa
MPTTVTTELKHETWQLLREYQQSRSETIRNQLVKLNFGLVRREAHYWMNQCHENYEDLLQ
VGCLGLIKAIEKFEISKGHAFSSFTVPYIRGEIQHYLRDKGVTVRIPRRYLALQQQAIGV
SRSLRAQYNRQPTDSELAAALEISPNEWQEIKLAWINRAPLSLDVPIQDGEEGSTSLGEL
VPDPHYRSFQLAQEDQIRLQQALVQLEQRTRDVLECVFLHDLTQKQVAEHLGISVVTVSR
RVKKGLDLLKKLMGVVDE
NT seq 777 nt   +upstreamnt  +downstreamnt
atgcctaccactgtcaccactgaactgaagcatgaaacctggcaattgttgcgagaatat
cagcaatcgcgctcagaaaccattcgcaatcagctagttaaactcaattttggactagtg
agaagagaagctcactattggatgaatcaatgccatgaaaactatgaagacttactccaa
gtcggctgtttaggtttgattaaggcaattgagaaatttgaaatttctaagggacatgct
tttagttcctttactgttccttatattcgcggtgaaattcaacattacctccgagataaa
ggtgtaactgtacgcattccccgacgctacttagcactgcaacagcaagcgataggagtt
tcgcgttctttgcgtgcacaatataatcgccaaccgactgactctgaactagcagctgca
ctagaaatttcccctaatgaatggcaggaaattaaattagcatggattaatcgtgcgcct
ttgagcttggatgtaccaatacaagatggagaagaaggttctacaagcctaggagaatta
gttccagatcctcactatcgcagttttcaattagcgcaagaagatcaaattcgtctacaa
caagcattggttcagttggaacagcgcacccgtgatgttttggaatgtgtatttttacat
gatttgacacaaaaacaagtagcagaacatttagggattagtgtagtcacggtttcccgg
agagtcaagaaaggactggacttgttgaaaaagcttatgggtgtggtagacgagtaa

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