Nostoc carneum: NIES2107_61560
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Entry
NIES2107_61560 CDS
T10358
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ncw Nostoc carneum
Pathway
ncw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ncw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES2107_61560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncw03021
]
NIES2107_61560
03400 DNA repair and recombination proteins [BR:
ncw03400
]
NIES2107_61560
Enzymes [BR:
ncw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES2107_61560
Transcription machinery [BR:
ncw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES2107_61560
DNA repair and recombination proteins [BR:
ncw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES2107_61560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BAY34251
LinkDB
All DBs
Position
7537590..7541645
Genome browser
AA seq
1351 aa
AA seq
DB search
MTNEQAIFRNRVVDKGQLRNLISWSFVNYGTARTAVMADKLKDLGFRYATKAGVSISVDD
LMVPPSKRALLEAAEEEIRATEARYQRGEITEVERFQKVIDTWNGTSEALKDEVVVHFKK
TNPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYIIS
SYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIREFDCGTTRGIPLRAMVEGGKTKISL
ATRLLGRVLGEDVIDPKTKEVIAPRNTPVSDELAAKIQKSGVTEVLARSPLTCEAARSVC
QHCYGWSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAQQVRSKIDG
TVKIPRKLKVRPYRTRHGEDALYVEANGILILEPKKVGTDTPPPQEVHLTQGSTLYVFDG
HQVKQGQLLAEVALGGRTTRANTEKAVKDVATDLAGEVQFAEVVPEQKTDRQGNTTTTAA
RGGLIWILSGEVYNLPPGAELVVKNGDAIASNGVLAETKLTTLHGGTVRLPEATPGKSTR
EIEIITASVVLDQATVTVQSSQGRNNYLVTTGNNQVFNLRATPGTKVQNGQVVAELIDDR
YRTTTGGFLKFAGVEVQKKGKAKLGYEVVQGGTLLWIPEETHEVNKDISLLLVEDGQFVE
AGTEVVKDIFCQNSGVIEVTQKNDILREVVIKPGELLMVDDPEAVIGRDNTFIQPGEEFQ
GTVATELRYIQYVESPEGPALLSRPVVEFAVPTNPDVPSTTSVSQQTGRSIELRAVQRLP
YKDSERVKSVEGVELLRTQLVLEIEQEGEQDHNASPLAADIELIPDTDNADLQRLQLVIL
ESLVIRRDIAADATQGSTQTSLEVQDGQTIAPGAVVARTQILCKEGGTVRGVQKGSENVR
RCLVLRESVDKITVNTSVQPNVKAGDLLVEGAEIAPGIFAPESGQVLNVRNTAASAAAGA
SALSTQNYSIDIRIGRPYRVSPGAVLQIEDGDLVQRGDNLVLLVFERAKTGDIIQGLPRI
EELLEARKPKEACILCRRAGEVKVVYGDGDEAIAIKVVEPNGVVTDYPLGPGQNLVVTDG
SHVTAGEPLSDGPSNPHEILEVFFSLGSEDGVYACASHALQKVQTFLVNEVQLVYQSQGI
DIADKHIEVIVRQMTNKVRIDDGGDTTMLPGELVELRQVEQVNEAMAITGGARAQYTPVL
LGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGYNAY
EETGAIDDYAALDSSSVLDEVDDPLDMVLDDRTARTYNLDAPSLTEPTFGATRRTERSIL
DDDDLIADEITDLVDDDDYEDDDDDDEDDYE
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacgaacaggcaattttccgcaatcgcgtagttgataaaggtcagctgagaaat
ttaatttcttggtcttttgtaaattacggtacagcgcgtaccgcagtcatggcggacaaa
ctgaaagacttaggatttcgctatgccaccaaagctggggtgtctataagtgttgatgat
ttgatggtgccaccttccaagcgggcgctgctagaagcagctgaagaagaaattcgcgct
actgaagctcgttaccaacgtggggaaattacggaagtagaacgcttccaaaaagtaatt
gatacctggaacggtaccagtgaagccctgaaagatgaggtagttgttcactttaaaaag
accaatcccctcaattccgtgtacatgatggcattctctggcgcacggggtaatatctcc
caagtccggcagctggtagggatgcggggattgatggcagatccccaaggggaaattatt
gacttacccatcaaaaccaacttccgcgaaggactcaccgttacggaatacattatttcg
tcttacggtgcccgcaaagggctggtagatacagccttacggacggctgactctggttat
ctcacccgtcgtttggtagacgtatcccaggatgtgattattcgggaatttgattgcggt
actaccagaggtattcccttacgggcgatggtagaaggtgggaaaaccaaaatttcctta
gctacacgcttattgggaagggtgttaggtgaagatgtcatagatcccaaaaccaaagaa
gtcattgcccctcgcaataccccagtttccgatgaattggcagcaaaaatccaaaaatct
ggcgtaactgaagtcttggcgcgatcgcccttaacttgtgaagcggcacgttcagtttgt
caacattgctatggctggagtttagcccacgccaagatggtggacttgggcgaagctgtg
ggaatcatcgccgcccaaagtatcggtgaacctggtacccagctcaccatgcggacattc
cacacaggtggtgtgttcactggggaagtagcacaacaagtacgctccaaaattgatggt
actgtcaaaattccgcggaaactcaaagttagaccatatcgtacccgccacggtgaagat
gcactgtatgttgaggctaacggtatcctgattttggaaccgaaaaaagtcggcaccgat
actccacctccccaagaagtccatctcactcaaggctcgacattatatgtatttgatgga
caccaagtaaaacaaggtcaattgctagcagaagttgccctgggtggacggacgactcgt
gccaatactgaaaaagcggtaaaagacgttgcaaccgacttggcaggagaagtacagttt
gccgaagttgtacccgaacaaaaaacagaccgccaaggcaataccactactacagccgct
agaggtggtttgatttggattttgtctggggaagtgtataacttaccacccggtgcagaa
ttggtagttaaaaatggcgatgcgatcgcctccaatggtgtattggcagaaaccaaacta
actaccttgcacggtggtacagtccgcttgccagaagctacccctggtaagagcactagg
gaaattgaaattatcactgcttctgtcgtcttagaccaagctactgtcaccgttcaaagc
tcccaaggtcgcaacaactacctagttactactggtaataaccaagtatttaacctcaga
gctacaccaggcacaaaagtgcagaatggtcaagtggtagctgaattaattgatgaccgc
tatcgcaccaccactgggggcttcctgaaattcgctggcgtagaagttcagaaaaaaggt
aaagccaagctcggttatgaagtagtacagggtggtaccctgttgtggattcccgaagaa
acccacgaagtcaacaaagacatctccctgctgttggtggaagatggacaattcgtggaa
gctggcaccgaagtcgtgaaggatatcttctgccaaaacagtggtgtaattgaagttact
cagaaaaacgacattttgcgggaagtcgtgattaagccaggtgaactgctgatggtagac
gatcccgaagcagtcatcggtcgagacaacaccttcattcaacccggagaagaattccaa
ggtacagtagctaccgaattgcgctatatccagtatgtggaatctccagaaggcccagct
ttattgagccgccccgtagtggagtttgctgtacccaccaacccagatgtcccttccacc
acatctgtaagtcaacaaactggacgttcaattgagttacgggcagtacaaagattgcct
tacaaagattctgagcgtgtcaagtctgtggaaggtgtagaactgctgcgtacccaacta
gttttggaaatcgagcaggaaggcgaacaagaccacaatgcttctcctttagcagcggat
attgaattaatccccgatactgacaacgccgatcttcagcgcttgcaattggtgattttg
gaatccttggtgattcgtcgcgatattgcggctgacgctacccaaggtagtacccaaact
tcactagaagtacaggatggacaaaccatcgcaccaggtgcagttgtcgcccgtacccaa
atcttgtgtaaagaaggcggtacagtgcgcggtgtccaaaaaggctctgaaaacgtccgc
cgttgtttagtattacgtgaaagtgttgacaaaatcacagtcaatactagcgtccaaccc
aacgtcaaagcaggagacttgttagttgaaggcgcagaaattgccccgggcatttttgct
cctgaatctggtcaagtcctcaatgtcagaaatacggctgctagtgctgcggctggagca
tcagcactcagtactcaaaattactccattgatatccgtatcggtcgtccctatcgagtc
agccctggtgctgtgttgcaaatcgaagacggcgatttggtacagcgtggtgataacttg
gtgttgctggtatttgaacgtgctaaaactggggacattatccaaggtttgccccggatt
gaggaactactagaagctcgcaaacccaaagaagcttgtattttatgccgtcgggctggt
gaagttaaggtagtttacggcgatggtgatgaagcgatcgcaattaaagtagtagaaccg
aatggagtagtcacagactatccccttggccccggacaaaacttagtggtgacagatggc
tcccatgtaactgcgggtgaacctctcagtgatggcccttctaacccccacgaaattttg
gaagttttctttagcctgggttccgaagatggagtctacgcttgtgctagccatgcttta
caaaaagtgcaaaccttcttggtgaacgaagtgcagttggtatatcaatcccaaggtatt
gatattgctgacaaacacatcgaagtaattgttcgccagatgaccaataaagttcggatt
gatgatggtggtgataccaccatgcttcccggtgaattggtggaattgcgccaggttgag
caggtgaacgaagcaatggcgattactggcggtgctagagcacagtacacccccgtattg
ttggggatcaccaaagcatccttgaacaccgacagctttatttctgctgcttctttccaa
gaaactaccagagtcttaaccgaagccgccattgaaggtaaatctgactggctgcggggg
ttaaaagaaaacgtgatcatcggacgcttgattcctgctggtactgggtacaatgcctat
gaagaaacaggagccattgatgattacgctgcactagatagcagcagcgtcttagatgaa
gtagatgatccgttagatatggtgctagacgatcgcacagctcgtacctacaatttagat
gctccgtctctgactgaacctacttttggtgctactagacgtacagaacgctctattttg
gatgacgatgacttaatcgccgatgaaatcaccgaccttgtagatgatgatgactacgag
gatgatgatgacgatgatgaggacgattacgaataa
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