Nostoc carneum: NIES2107_65550
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Entry
NIES2107_65550 CDS
T10358
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ncw Nostoc carneum
Pathway
ncw03410
Base excision repair
ncw03430
Mismatch repair
ncw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ncw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NIES2107_65550
03430 Mismatch repair
NIES2107_65550
03440 Homologous recombination
NIES2107_65550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncw03400
]
NIES2107_65550
DNA repair and recombination proteins [BR:
ncw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NIES2107_65550
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NIES2107_65550
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIES2107_65550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BAY34649
LinkDB
All DBs
Position
complement(8029027..8031132)
Genome browser
AA seq
701 aa
AA seq
DB search
MLDIARSETSKPRRRLPNQRWQIYPQQAEFAQKLAISNHISPIVSQLLINRGIETLEAAQ
AFLEPESLILPAPLEEFPDLALSVELLQNAIASSEKIAICGDYDADGMTSTALLLRSLRA
LGAKVDYAIPSRMHDGYGINKRIVEEFHSEGVGLILTVDNGISAFEPIARARELGLKVIV
TDHHDIPQKLPPANAILNPKLIAESSPYRGVAGVGVAYILAVSLAQQLGETRGLIQPMLA
LFTLGTIADLAPLTGVNRRWVKRGLQLLPKSHVPGIQALIQMAGVQAEDKGTRGQGEEGS
NPKSKIQNPKSLKPEDIGFKLGPRINAIGRIGDPQIVIDLLTTDDMGIALERAMQCESVN
QQRQEMCEQIEQEAIAYVETEFITSLPQDRVLVVVQPNWHHGVIGIVASRLVERYGVPVF
IGTYEDETHIRGSARGIPEFNVFEALQACHDLLGKYGGHKAAGGFSLPAQNLAKLRSRLI
EFANQCLEPQHLKPLLKIDTQVNFSEINHQLYQQLNTLHPCGIDNPDPVFWTPNVQVVEQ
QIVGKGHIKLTLAQTVEQQQYKIKAIAWRWRDYYPLPSRVDVAYKLRENHFNGNTAIEME
LIGVRLPMQSHLFFRSSTRPLTTSFEYKQRHYTCGIFQQNSLPELRIKNSEGKVLVMQPG
HTIGLLGNSREDAKEVDVCEPQYDSIIQAALQALSVLSSKS
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacattgctcgctcggaaacatcaaaacctcgcaggcgcttaccgaatcagcgt
tggcaaatttacccacaacaagctgaatttgctcaaaagttggctatatccaaccatatc
tctccaattgtcagccagcttttgattaaccggggtattgaaaccctagaagcagcacaa
gcctttttagaaccagaatcgttaattttacctgcaccattagaagaattccccgattta
gcgctgagtgtcgagttactacaaaatgcgatcgcctcatccgaaaaaattgctatttgt
ggtgattatgatgcagatggaatgactagcacggctttactattgcggagtctccgcgct
ctgggtgcgaaagttgattacgctatccctagccggatgcatgatggttatggcattaat
aaacgaattgttgaagaattccacagcgaaggcgtggggttaattctcactgtggataat
ggtatttccgcctttgaacccatcgccagagccagagaactaggattaaaggtaattgtc
accgaccatcacgacattccgcaaaaattaccaccagctaacgcgattctcaaccccaaa
ttaatcgccgaatcttcaccctatcgcggtgttgcaggtgtaggtgtagcttatatcttg
gctgtatctctagcacaacagctaggggagactagaggcttaattcagccgatgctagca
ctgtttaccttgggaacgatcgcagatttagcacccttaaccggcgtaaaccgtcgctgg
gtaaaacgcggtttacaactcctacccaaatcccatgtaccagggatacaagccttaatt
caaatggctggagttcaagcagaagacaaggggacaaggggacaaggggaggaggggagc
aatccaaaatccaaaatccaaaatccaaaatcgttaaagcctgaagatattggctttaaa
ctggggccgagaattaatgcaattggtaggattggcgatccgcagattgtaattgatttg
ctaactacagatgatatgggaatagcgctggaaagagcaatgcagtgcgaatctgtaaac
caacagcgccaggaaatgtgcgagcaaattgaacaagaagcgatcgcttatgtagaaact
gaatttatcacatcactcccgcaagacagagtattagttgttgtccaaccaaactggcat
catggtgtaattgggattgtcgcttctcggttggtggaacgctacggtgtgccagtattt
attggaacatacgaagatgaaacccatattcgcggttccgccagaggaattcccgaattc
aacgtatttgaagctttgcaagcttgtcacgacttactaggtaaatatggcggacataaa
gccgccggaggattttctttaccagcgcagaatctagcaaaattgcgatcgcgcttaatt
gagtttgctaaccaatgtctagaacctcagcacctcaaaccgctactaaaaattgatact
caagtcaattttagtgaaatcaatcaccagctttatcaacagcttaatactctgcatccc
tgcggtatcgataaccccgatccagtcttctggactcctaatgtgcaagtagttgagcaa
caaatagtcgggaaaggtcatattaaactcacgcttgctcaaactgtcgagcagcaacag
tataaaattaaggcgatcgcttggcgttggcgcgattactatcccctaccgtcgcgggtg
gatgttgcttataaactgcgagaaaatcattttaacggcaatactgctattgagatggaa
ctaataggtgtgcggctaccaatgcaatctcacctctttttccgttcctcaactcgtccg
ttaacaaccagctttgagtacaaacagcgccattacacttgtggtatctttcaacaaaat
tctttaccagaattaaggattaaaaattctgaaggcaaagtcctagtgatgcaaccaggg
catacaatcgggttgctaggtaacagtcgtgaagatgccaaagaggttgatgtctgtgaa
ccacaatatgacagcatcattcaagccgcgcttcaggctttgtcagtgctgagttccaag
tcctga
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