Nostoc carneum: NIES2107_69380
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Entry
NIES2107_69380 CDS
T10358
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ncw Nostoc carneum
Pathway
ncw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES2107_69380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncw03019
]
NIES2107_69380
03009 Ribosome biogenesis [BR:
ncw03009
]
NIES2107_69380
Enzymes [BR:
ncw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NIES2107_69380
Messenger RNA biogenesis [BR:
ncw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES2107_69380
Ribosome biogenesis [BR:
ncw03009
]
Prokaryotic type
rRNA helicases
NIES2107_69380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Cas3-like_C_2
ADAMTSL1
Sigma70_r4
AAA_19
VpsR
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BAY35027
LinkDB
All DBs
Position
plasmid1:complement(141857..143389)
Genome browser
AA seq
510 aa
AA seq
DB search
MNLSFQELGISQERVEQLEKIGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLP
ILERLDVTQRAVQALVLTPTRELAMQVHDAITQFIGDEGLRVLAIYGGQSIDRQILQLRR
GVHMVVGTPGRVIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPEERQTA
LFSATMPPSIRQLVNKFLRSPATVTVEQPKAAPTKINQVAYLIPRHWTKAKALQPILEME
DPESALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLSRFRNRQVRWVVATD
IAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQVFERH
NRQSWQLLSIPTRAQIEARHINKLQEQVREALAGERLASFLPIVSELIEKYDAQAIAAAA
LQIAYDQTRPAWLSSDIEIPQEDNMPTPKPKLVKRRDGSGDRSRSNWSKSDNIGEDERRS
TPKPKLRAGRRDTSPVNHKLGSSSARESAS
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgaatctttcgtttcaagaactaggcatttcacaagaacgtgttgaacaactagaaaaa
attggtttcaccacaccaaccaatattcaaactcaagcaattccccaactgctagctgga
cgcgatgtggttggacaatctcaaaccggaactggtaaaaccgcagctttttcattgcca
attctagaacggctagatgtgactcaaagagccgtgcaagcgctggtgttaacaccaact
cgtgaattagccatgcaagttcacgatgcgattacccaatttattggtgatgaaggattg
cgggtattagcaatctacggtggtcaatcaattgatcgccaaattttacaactgcgacgt
ggtgtccacatggttgtgggtactcccggacgagtaattgacttgctagatcgcggatgt
ttgaagctcgatcaagttaaatggtttgtgttggatgaagccgatgaaatgttgagcatg
ggctttatcgatgacgtaattaaaatcttgtcccaagcgccagaagaacggcaaacagcc
ctattctcagcgactatgccgccatccattcggcaattggtcaacaaatttttgcgatcg
cctgcgacagttaccgttgaacagccaaaagctgctcccaccaaaattaatcaggtagct
tacctaattcctcgccactggacaaaagccaaagctttacagccaattctggaaatggaa
gatccagaatcagcattgatatttgtccgtaccagacgcaccgccgccgaactcaccagt
cagctgcaagcagccggacacagtgtcgatgaataccacggtgatttatctcaacaagct
agagaacgcttactcagccgcttccgcaatcgccaagtacgctgggtagtagcaaccgat
attgcagcccgggggttagatgtagatcaactgtctcatgtgatcaactacgacttaccc
gatagcgtagaaacctacgtccaccgtattggtcgtactggtcgtgctggtaaagaagga
acagcgatttcactagtacaaccatttgagcgccgcaagcagcaagtctttgaacgccat
aaccgtcaaagttggcaattgctttcaatccccaccagagcacaaattgaagcgcggcac
atcaataaattgcaagagcaagttagagaagctttagctggcgaacgtttagcttcattc
ttgccaatagtcagcgaactgatcgaaaaatacgatgctcaagcgatcgcagctgcggcc
ttgcaaatcgcttacgatcaaactcgtccagcttggttaagttcagacattgaaattccc
caagaagacaatatgccaactcctaagcccaagttggttaagcgtcgtgatggttcaggc
gatcgttcccgttccaattggagcaaatcagacaacattggcgaagacgaaagacgttct
actcccaagccaaaattgcgcgcaggtcgtcgtgatacttcccctgttaatcacaagcta
ggttcatcttcagctagagaatctgcttcataa
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