Nonomuraea coxensis: Nocox_10125
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Entry
Nocox_10125 CDS
T07466
Name
(GenBank) Putative ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ncx
Nonomuraea coxensis
Pathway
ncx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nocox_10125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncx03019
]
Nocox_10125
Messenger RNA biogenesis [BR:
ncx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Nocox_10125
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
QYC39645
UniProt:
A0ABX8TVX9
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Position
2096933..2098618
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AA seq
561 aa
AA seq
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MSHPHPELGPPPALPEGGLRIVALGGLGEIGRNMAVFEYDGRLLIVDCGVLFPEPDQPGV
DLILPDFEYIRDRLDDIEAMVLTHAHEDHIGAVPYLLRERRNIPLIGSKLTLALIEAKLS
EHRIQPNKVEVVEGERHVFGPFDCEFLAVNHSIPDALAVAIRTPAGIVLHTGDFRMDQLP
SDGRLTDLGGFARLGSEGVDLLMSDSTNAEVPGFVTSEREIAPVIDEVIRTSEQRVIVAS
FASHVHRIQQVMDAAAKHGRKVALVGRSMVRNMGVARDLGYLKVPPELIVDSRDIEEWPP
QDVVLICTGSQGEPMAALSRMANRDHPIRIAQGDTVLLASSLVPGNETAVNKVINGLTRW
GARVIHKGNAKVHVSGHAAAGELLYVLNLTRPSNFMPVHGEWRHLRAHAKLAALTGVPDD
HIVIAEDGVVVDLVDGRARIVGAVHAGYVYVDGTSVGEITDTSLKDRRILGDEGFISVVV
VVDSATGKLTAGPEIHARGSGIDPAQFDEFIPQIERALEEKAADGVVDMQEIRRVVRRTV
GRWVSDTYRRRPMIIPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagccatccgcatcctgagctcggccccccgccggcgctgcctgaaggcggcctgcgc
atcgtcgcgctcggcgggctgggagagatcggcagaaacatggccgtgttcgaatacgac
ggccgcctgctgatcgtcgactgcggggtcttgttccccgaacccgaccagccgggcgtc
gacctcatcctgcccgacttcgagtacatcagggatcgcctcgacgacatcgaggccatg
gtgctgacacacgctcacgaggaccacatcggggcggtgccgtacctgctgcgcgaacga
cgcaacatccccctgatcggttccaagctcactttggccctgatcgaggccaaactcagc
gagcaccggatccagccgaacaaggtggaggtcgtcgaaggcgaacggcacgtcttcggg
cctttcgactgcgagttcctcgcggtcaaccattcgatcccggacgcgctggccgtggcg
atcaggacgccggccggcatcgtgctgcacaccggcgacttccggatggaccagttgccg
agcgacggccggctcaccgacctcggcggcttcgccaggctcggcagcgagggcgtcgac
ctgctgatgtccgactccaccaacgccgaggtgcccgggttcgtcaccagtgagcgagag
atcgcaccggtcatcgacgaggtgatccgcacctccgagcaacgggtcatcgtcgccagc
ttcgcctcccacgtgcaccgcatccagcaggtcatggacgccgcggccaagcatggccgc
aaggtggccctggtcggccggtcgatggtgcgcaacatgggcgtggcgcgagacctgggc
tatctcaaggtgcccccggagttgatcgtcgactcgcgggacatcgaggagtggccgccg
caggacgtggtgctcatctgcaccggttcgcagggcgagcccatggcggcgctgtcgcgg
atggccaatcgcgatcacccgatccgcatcgcccaaggcgacaccgtgctgctggcttcg
tcgctggtgcccgggaacgagacggcggtcaacaaggtgatcaacgggctgaccagatgg
ggcgcccgggtcatccacaagggcaacgccaaggtgcacgtctccggccacgcggccgcc
ggcgagctcctgtacgtgctgaacctgacccgcccctcgaacttcatgcccgtgcacggc
gaatggcgccacctgcgcgcccacgccaagctggccgccctcaccggcgtccccgacgac
cacatcgtgatcgccgaggacggggttgtggtcgacctggtcgacggcagggcgaggatc
gtcggcgcggtgcatgccggctacgtgtacgtggacggcacctccgtgggcgagatcacc
gacacctcgctcaaggaccgcaggattctcggcgacgaggggttcatctccgtggtcgtg
gtcgtcgactcggccaccggcaaactcaccgccggccccgagatccacgcccgcggctcg
ggcatcgatcccgcccagttcgatgagttcatcccgcagatcgagcgggcgctcgaggag
aaggccgccgacggcgtggtggacatgcaggagatccgccgcgtggtccggcgcacggtg
ggacgctgggtgagcgatacctaccggcgtcgtccgatgatcatccctgtggtggtcgaa
gtctga
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