Nonomuraea coxensis: Nocox_36705
Help
Entry
Nocox_36705 CDS
T07466
Symbol
rtcB1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ncx
Nonomuraea coxensis
Brite
KEGG Orthology (KO) [BR:
ncx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ncx03016
]
Nocox_36705 (rtcB1)
Enzymes [BR:
ncx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Nocox_36705 (rtcB1)
Transfer RNA biogenesis [BR:
ncx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Nocox_36705 (rtcB1)
Prokaryotic type
tRNA splicing ligases
Nocox_36705 (rtcB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QYC44895
UniProt:
A0ABX8UBH6
LinkDB
All DBs
Position
complement(7860961..7862148)
Genome browser
AA seq
395 aa
AA seq
DB search
MTYHEVTGTKHPIRMWARPETVDPQAMQQLRNVANLPWVHGVAVMPDVHHGKGATVGSVI
AMREAVSPAAVGVDIGCGMSAVKTSYTAARLPDNLAYLRGKLEQAVPVGFAHHKRPVDPG
KIFGMRTAGWAEFWKSFDDLAPAVRDRRERAEAQMGTLGGGNHFLEICADDEGAVWVVLH
SGSRNIGKELAEHHIGVARGLSHNQGLVDRDLAVFLGGTPEMDAYRRDLYWAQDYARRNR
ALMMGLVCDVLRRHLPDITFEQPISCHHNYVAEERYEGVDVLVTRKGAIRAGSGDLGIIP
GSMATGTYIVKGLGNGLAYNSASHGAGRKMSRNKAKKTFTLKDLQEQTFGVECRKDAGVL
DEIPGAYKDLESVMAAQTDLVQVVAHLRQLVCIKG
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgacgtaccacgaggtgaccgggaccaagcacccgatcaggatgtgggcgcggccggag
accgtcgatccccaggcgatgcagcagctacgcaacgtcgcgaacctcccctgggtccac
ggcgtcgcagtcatgcccgacgtccaccacggcaagggcgcgacggtcgggtcggtcatc
gccatgcgagaggccgtctcgccggccgccgtcggcgtggacatcggctgcgggatgagc
gcggtcaagacctcgtacacggcggcccggctcccggacaacctcgcctacctgcgcggg
aagctggagcaggcggtgccggtcggcttcgcgcaccacaagcgcccggtcgaccccggc
aagatcttcgggatgcgcacggccggctgggccgagttctggaagagcttcgacgacctc
gccccggccgtacgggaccgccgcgagcgggccgaggcgcagatgggcaccctcggcggc
ggcaaccacttcctggagatctgcgccgacgacgagggcgccgtctgggtcgtcctccac
tccggctcgcgcaacatcggcaaggaactggccgagcaccacatcggcgtcgcccgcggc
ctgtcgcacaaccaggggctggtggaccgcgacctcgccgtcttcctcggcgggacgccc
gagatggacgcctaccgccgcgacctctactgggcccaggactacgcgcgccgcaaccgg
gcgctcatgatgggcctggtctgcgacgtcctccgccgccacctgccggacatcaccttc
gagcagcccatctcctgccaccacaactacgtggcggaggagcgctacgagggcgtggac
gtgctcgtcacccgcaagggcgcgatccgggccggctccggcgacctcggcatcatcccg
ggctccatggccaccgggacgtacatcgtcaaggggctggggaacgggctggcgtacaac
tcggcctcgcacggcgccggccgcaagatgagccggaacaaggcgaagaagacgttcacc
ctgaaggacctgcaggagcagacgttcggggtggagtgcaggaaggacgcgggggtgctg
gacgagattccgggggcgtacaaggacctggagtcggtcatggccgcccagaccgacctg
gtccaggtcgtcgcccacctgcgccagctcgtctgcatcaagggctga
DBGET
integrated database retrieval system
