KEGG   Nonomuraea coxensis: Nocox_38960
Entry
Nocox_38960       CDS       T07466                                 
Symbol
ligT
Name
(GenBank) 2'-5'-RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
ncx  Nonomuraea coxensis
Brite
KEGG Orthology (KO) [BR:ncx00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ncx03016]
    Nocox_38960 (ligT)
Enzymes [BR:ncx01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     Nocox_38960 (ligT)
Transfer RNA biogenesis [BR:ncx03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    Nocox_38960 (ligT)
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS HU-CCDC81_euk_2
Other DBs
NCBI-ProteinID: QYC45342
LinkDB
Position
complement(8334906..8335463)
AA seq 185 aa
MRLFAALVPPDEVLDEVERAIAPHVGQVPGLRWPDRATWHITLGFFGEVPERALPELETR
LARAVHRHHALDLAFAGFGAFSSVRRARVFWIGVTGDSMTRLADSVRAGARRAGAAQTDA
KPLHPHLTLARAKTETDLRPLVESLSGFSGSPWRAEAVRLVRSSGGPQVRYESLAEWALA
PAERD
NT seq 558 nt   +upstreamnt  +downstreamnt
atgaggctcttcgcggccctggtgccgcccgacgaggtgctggacgaggtcgaacgcgcg
atcgcgccgcacgtcgggcaggtgccggggctgcgctggcccgaccgggccacgtggcac
atcacgctgggcttcttcggcgaggtgccggagcgggcgctgccggagctggagacccgc
ctggcccgcgccgtgcaccggcaccatgcgctcgacctggccttcgccggcttcggcgcc
ttctcctccgtgcgcagggcccgcgtcttctggatcggcgtcaccggcgactcgatgacg
aggctcgccgactccgtacgcgccggcgcccgccgggcgggagccgcgcagaccgacgcc
aaacccctccacccgcacctcacgctggcccgcgcgaagaccgagacggacctccgcccg
ctggtggagtcgctgtcgggcttcagcggctcgccctggcgggcggaggcggtgcggctg
gtgcgcagcagcggcggaccgcaggtgaggtacgagtcactcgccgaatgggcgctcgca
cccgccgagcgggactag

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