Nocardia cyriacigeorgica: NOCYR_3695
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Entry
NOCYR_3695 CDS
T01756
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ncy
Nocardia cyriacigeorgica
Brite
KEGG Orthology (KO) [BR:
ncy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncy03019
]
NOCYR_3695 (hrpA)
Enzymes [BR:
ncy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NOCYR_3695 (hrpA)
Messenger RNA biogenesis [BR:
ncy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NOCYR_3695 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
AAA_30
nSTAND3
HA2_N
SLFN-g3_helicase
T2SSE
NACHT
ResIII
TsaE
AAA_16
FXR_C1
Motif
Other DBs
NCBI-ProteinID:
CCF64458
UniProt:
H6R359
LinkDB
All DBs
Position
4079514..4083704
Genome browser
AA seq
1396 aa
AA seq
DB search
MTRTATTPRELRTRLATLTLRDEHRLRRQLDRARGGDLGRIESEIAVAEQRIANRRSAVP
EIRYPQHLPVTARRDDIAAAIAANQVVIVAGETGSGKTTQIPKICLELGRGIRGMIGHTQ
PRRLAARAVAERIAEELGTELGDAVGYTVRFTDQAAEHTVVKLMTDGILLAEIQRDRLLR
AYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDPELFARHFADATGTPA
PIVEVSGRSYPVEIRYRPLALPVPAADEDDEDRVLDRDPVDAIGDAVTELFAEGDGDVLV
FLSGEREIRDAADALRELKLPRTEILPLYARLSAAEQHRVFAPHTGRRVVLATNVAETSL
TVPGIRYVVDPGTARISRYSMRTKVQRLPIEPISQASARQRSGRCGRVADGICIRLYSED
DFESRPLFTDPEILRTNLAAVILQMTALGLGDIEKFPFVEPPDSRAIRDGIALLEELGAL
VPRSARASAGSGATTDSAEQPSGSGADNATGPAASGKPSEQSPAAGSRSRGRGARRRTDD
DGGLSLTPIGREMARLPVDPRMARMLVQAHRDGCLAEVLIIVAALSIQDVRERPADQQQA
ADTKHARFVVENSDFLAYLRLWDYLSVQRKSLSSNQFRRMCREEFLHYLRIREWQDLHGQ
LRTITKGLGWSAHSEGDSRAAEPQRGAAAKTGGRGKSSSKPAKVAVVEDDSLPWDVTAIH
QSLLAGMLSHIGVREAESREFLGARGAKFMIFPGSSLAKKPPRWVMAAELVETSRLWGRM
AARVEPEWAERLAGDLVKRTYSEPHWSSKRGVARAYERVTLYGVPLVTRRPVDYSRIDPV
ISRELFLRHALVQGEWQTHHEFFHRNRELLDDVADLEHRARRRDILVDDEVLFDFYDRRI
PADIVSVRHFDKWWRTTKRTDPTLLDFTADTVVNEGAAPLDPTDFPDAWRQGELSFPLTY
QFEPGNDDDGVTARIPVAQLAHVRAMGFDWLVPGMREELATALIKTLPKNLRRAVVPAPD
FAAAALAALTPRAEPLRTGLARELSRLGSVPIAPNDLDPSALPDHLRMTFAAVDDNGRVL
ARDKNLARLKTRLSEQVSESVARATAGAERAPAIVWTAESLGTVPAAVKREVAGQTITGY
PALVPEDEGVAVRVLSSPAEQATAMRAGTRELVLRAIPTSLRTVTAGLSPADRLVVSQNP
YGSLDALVADCRAAAADELIAAAGGPVHSPEQFEALVAKIRPELAGAAARMVRLAVPVLA
EAHRVSTALASTGEADIADDVRAQLADLVFDGFISEWGSARLRELPRYLRAAVVRLEALP
GSGVRDRQGMAEVDAVLAAYERLLAGLPEPRRHAPEVAEIWWMIEELRVSLFAQKLGTPY
PVSVKRIQKAIAAIRR
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgaccaggaccgcaaccaccccgcgtgagcttcgcacccgcctggccactctcaccctc
cgcgacgagcatcggctgcgcaggcagctcgaccgcgcgcgcggcggtgatctcgggcgg
atcgagtccgagatcgcggtggccgaacagcggatcgcgaaccggcggtctgccgtaccc
gagatccgctacccgcaacaccttccggtcaccgcgcgccgcgacgatatcgccgccgcc
atcgccgccaaccaggtcgtcatcgtggcgggtgagacgggctcgggtaagaccacccag
atccccaagatctgcttggaactcgggcgcggcatccgcggcatgatcggccacacccag
ccgcgcaggctcgccgcccgcgccgtcgccgaacgcatcgccgaagagctgggcaccgaa
ctcggcgatgccgtgggctacacggtccgcttcaccgatcaggccgccgagcacaccgtg
gtcaagctgatgaccgacggcatcctgctcgccgagatccagcgtgaccggctgttgcgc
gcctacgacacgatcatcatcgacgaggcgcacgaacgcagcctcaatatcgatttcctg
ctcggctatctcaaacagctgctgccgcgccggcccgatctgaaggtgatcatcacctcc
gcgaccatcgatccagaactgttcgcccgccatttcgccgacgccaccggcacgccggca
ccgatcgtcgaggtgtcgggccggtcgtatccggtggagatccgctatcggccgctggcg
ctgccggtgcccgccgctgacgaggacgacgaggatcgcgtcctggaccgcgacccggtg
gacgccatcggcgacgcggtgaccgaactgttcgccgagggcgacggcgatgtgctggtg
ttcctgtccggtgaacgcgaaatccgcgacgccgccgacgcactgcgcgagctgaaactc
ccccgcaccgagatcctgccgctgtacgcacgattgtcggcggccgaacagcatcgggtg
ttcgccccgcacaccggccgccgggtcgtgctggccaccaatgtcgccgagacctcgctg
acggtgccgggcatccgctatgtcgtcgatccgggcaccgcgcggatctcacgctattcg
atgcgcaccaaggtgcagcggctgccgatcgaaccgatctcgcaggcctcggcccggcag
cgttccgggcggtgcggtcgagtggccgacggcatctgtatccggctgtactccgaggac
gatttcgaatcccgtccgctgttcaccgatccggagattctgcgcaccaatctggcggcg
gtcattctgcaaatgacggcgctcggcctcggcgatatcgagaagttcccgttcgtggag
ccgccggactcgcgcgcgatccgcgacggcatcgccctgctcgaagagctgggtgccctc
gtgccccggtccgcgcgcgcgtcagcgggcagcggcgccacgaccgatagcgctgagcag
ccgtccggctcgggagcggacaacgcgactggtcccgccgcatccgggaagccgagcgaa
cagtcgcccgcggccggctcgcgcagccgtggccgcggagcgcgacgtcgcacggacgac
gacggcggcctgtcgctgacgccgatcggccgcgagatggcgcgcctgccggtggatccg
cggatggcgcggatgctggtgcaggctcatcgcgacggctgtctggccgaggtgctgatc
atcgtggcggcattgtcgatccaggatgtgcgcgaacggccggccgatcagcagcaggcc
gccgacaccaaacacgcgcggttcgtcgtcgagaactccgatttcctggcgtacctgcgc
ctatgggattacctgtcggtgcaacgtaaatcattgtcgtccaatcaattccggcggatg
tgccgcgaggagttcctgcattatctgcgtattcgggaatggcaggacctgcacgggcag
ttgcgtaccatcaccaagggcttgggctggtcggcgcacagcgagggcgacagccgtgcg
gccgaaccgcagcgcggggcggcggcgaagacgggcgggcgcggcaagtcatccagcaag
cccgccaaggttgccgtagtcgaggacgactcgctgccgtgggatgtgaccgcgatccat
cagtcgctgctggcgggcatgctgtcgcacatcggcgtccgggaggcggaatcgcgcgag
ttcctcggtgcgcgcggtgcgaagttcatgatcttcccgggttcgtcgctggcgaagaaa
ccgccgcgctgggtgatggccgccgaactggtggagacctcgcggctgtggggccgcatg
gccgcgcgggtggagccggaatgggccgaacgcctggccggggatctggtcaaacgcacc
tattccgaaccgcattggtcgtccaaacgcggcgtcgcccgcgcctatgaacgggtcacc
ctctacggcgttccgctggtgacgcgacggccggtcgactacagccgcatcgatccggtc
atctcgcgcgagttgttcctgcgccatgccctggtgcagggcgaatggcagacccaccac
gagttcttccaccgcaaccgcgaactgctcgacgatgtcgccgatctcgaacaccgggcc
cgccgccgcgacatcctggtcgacgacgaggtgctgttcgacttctacgaccggcgcata
cccgccgacatcgtgtccgtgcgccacttcgacaagtggtggcgcaccaccaaacgcacc
gatcccacgctgctggatttcaccgccgacaccgtcgtcaacgagggcgcggcgccgctg
gatccgaccgatttcccggacgcctggcgccagggcgagctgagttttccgctcacctac
caattcgaacccggcaacgacgatgacggcgtcaccgcccggatcccggtcgcgcagctg
gcgcatgtgcgcgccatgggcttcgactggctggtgcccggcatgcgcgaagaactggcg
accgcgctgatcaagacgctgccgaagaatctgcgccgtgccgtggtgcccgcgcccgat
ttcgccgcggcggcgctggccgcactcaccccgcgcgccgaaccgctgcgcaccggtctg
gcgcgggagctgtcgcggctgggatcggtgccgatcgcaccgaacgatctggatccgtcg
gccttgcccgatcatctgcggatgaccttcgccgccgtcgacgacaacggccgggtactg
gcccgcgacaagaacctggcccggctgaaaacccggctgtcggaacaggtgtcggaatcg
gtcgcccgcgccaccgccggcgccgaacgcgcccccgcgatcgtctggaccgccgaatcg
ctcggcacggtgcccgcggcggtgaaacgagaggtcgccgggcagaccatcaccggctat
ccggcgctggtccccgaggacgagggcgtcgcggtgcgggtgctgagctcgccggccgaa
caagccaccgccatgcgggccggcacccgcgagctggtgctgcgcgccatcccgacctcg
ctgcggacggtcaccgcgggcctgtcccccgccgaccggctggtggtgagccagaatccc
tacggttcgctggacgcgctggtcgccgattgccgggcggccgcggccgacgaactcatc
gccgccgccggtggaccggtgcacagtcccgaacagttcgaggcgctggtggcgaagatc
cggccggaactggccggggcagccgcgcgcatggtgcggctggcggtcccggtgctcgcc
gaagcgcaccgggtctcgacggcgctggcgagcaccggcgaagccgatatcgccgacgac
gtccgcgctcagctcgccgatctggtcttcgacggattcatctccgaatggggcagcgcg
cggctgcgggaactgccgcggtatctgcgggcggccgtggtgcggctggaggcgctgccc
ggttcgggtgtgcgcgaccgtcagggcatggccgaggtcgacgccgtgctggcggcctat
gagcggctgctggccgggctgcccgaaccgcgcaggcacgcgccggaggtggccgagatc
tggtggatgatcgaggagctgcgcgtcagcttgttcgcgcagaagctcggcacgccgtat
ccggtgtcggtcaagcggatccagaaggcgatcgccgccatccgccggtag
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