Nocardia cyriacigeorgica: NOCYR_4266
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Entry
NOCYR_4266 CDS
T01756
Name
(GenBank) putative DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ncy
Nocardia cyriacigeorgica
Pathway
ncy03420
Nucleotide excision repair
ncy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NOCYR_4266
03430 Mismatch repair
NOCYR_4266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncy03400
]
NOCYR_4266
Enzymes [BR:
ncy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NOCYR_4266
DNA repair and recombination proteins [BR:
ncy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NOCYR_4266
MMR (mismatch excision repair)
Other MMR factors
NOCYR_4266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CCF65024
UniProt:
H6RAL2
LinkDB
All DBs
Position
complement(4692425..4695778)
Genome browser
AA seq
1117 aa
AA seq
DB search
MSARVTPWQLAEALGLPPPTDEQAAVIAAPPGPTLVVAGAGAGKTETMAARVVWMVANRL
VLPDEVLGLTFTRKAAQQLTTRIRTRLARLAGAPLLRELDPSGGLRAALTGAEPEISTYH
SYAGRLLTEHGLLLPVEPSATLLTETQLWQLAHQVVRTWDGDLDTERTPVSVTEAVLALS
GQLAEHLVEPEELAEAHTELEKLVHTLPAGPRQRGGPSQELLKILKVQRERVALLPLVRQ
LSEALRRRGALDFGAQMSLAARLADEHAEVGAAERARFRLVLLDEYQDTGHAQRILLAAL
FGGTGSGERPAVTAVGDPMQSIYGWRGASAANLPRFATDFPAAPGVPAPTLSLLTSWRNP
PEALALANLVADPLRRKAIEGGGVTVDALRAKPAAEAGTVAFALTDTVAAEREWFATRIA
ADWQARHDAGEQPPTSAVLVRRNADAAPIAEALREQGLPVEIVGLGGLLATPEVADVVAT
LRLIAEPGAGGAAVRILTGARWRIGVADLSALSRRARELSIARGTASTGDISDGAALAVA
LREVAPEPAEQAGLADAIADPGPAEQYSPDGYRRIVALGRELAALRERSGQPLTELVADV
ERTIGVGVETQARRAMSGAGAGREHLDAFAEVVAGYAGDSGASLSGLLAFLTAAESVENG
LEPGEVEVAKDRVQVLTVHAAKGLEWEIVAVPHVVRDVFPSGKASGSWLGALAELPTSLR
GDRARDDDGADGVPVLDLTDLYDRADLDRAIKEHKAALDRRRLDEDRRLFYVALTRTERM
LLVSGHYWSDSSPSVKGPSEFLLELKQAIEDPVSPAHGAADVDRWDDPPEPDAVNPFTDN
PPTAHWPRDPLGRRRAPIEEGAQLVRAAMAELTAHPDTPDDEDDPDGWAADVEALLAEHH
SATGVAEEVELPSRLPATALVELRADPARLAARLRRPLPYPPNPLARRGTAFHAWVQRWF
AAEGLLGLDELPGAADTADGADAELARMQEAFLSSRWAHRSPIEVEVPFETTIAGTVIRG
RMDAVFAEPDGRWTVVDWKTGAEPDAADEPAVAVQLAVYRLAWARLMAARTGADPDELLD
RIGAAFHYVRSGRTVAPVDLPGANELTELISSAAPDG
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcgcgggtcacgccctggcagctcgccgaggccctcggcctgcccccaccgacc
gatgagcaggccgcggtgatcgccgcaccgcccggtccgacgctggtggtggcaggcgcg
ggtgccgggaagaccgagacgatggccgcgcgtgtggtgtggatggtcgccaaccgcctg
gtgctgcccgatgaggtgctcggcctgaccttcacccgcaaagccgcccagcagttgacc
acccgcatccgtacccgcctggcccggctcgccggcgcgccgctgctgcgcgaactcgac
ccgtccggcggcttgcgggccgcgctgaccggcgccgaaccggagatcagcacctaccac
tcgtatgcgggcaggctgctgaccgaacacggtctgctgctgccggtggagccgtcggcg
acgctgctcaccgaaacccagttgtggcagctggcccatcaggtggtgcgcacctgggac
ggcgatctggataccgaacgcaccccagtgtctgttaccgaggcggtgctcgcgctgtcg
ggtcagctggccgaacatctggtggagccggaggaattggccgaggcgcacaccgaactg
gagaagctggtgcacaccctgcccgcgggtccgcgccagcgcggcgggccgagccaggag
ctgctgaagatcctgaaggtgcagcgggagcgggtggcgttgctgccgctggttcgtcag
ttgagtgaggcgttgcggcggcgtggcgctttggatttcggtgcgcagatgtcgctggcc
gcgcggctggccgacgagcacgccgaggtcggcgccgccgaacgcgcccggttccggctg
gtgctgctcgacgaatatcaggacaccggccacgcccagcgcatcctgctggccgccctg
ttcggcggcaccggctccggtgagcgtcctgccgtgacggcggtgggcgaccccatgcag
tccatctacggctggcgcggcgcctccgcggccaacctgccgcgcttcgccaccgacttc
cccgccgcgcccggcgtgcccgcgccgacgctgtcgctgttgaccagctggcgcaacccg
cccgaggcactggcgctggccaacctggtcgcggacccgttgcgccgcaaggcgatcgag
ggcggcggcgtcaccgtcgacgcgctgcgcgccaaacccgccgccgaagccggcacggtg
gccttcgccctcaccgacaccgtcgccgccgagcgcgagtggttcgccacccggatcgcg
gccgactggcaggcccgccacgacgcgggcgaacagccgcccacttcggcggtgctggtg
cgccgcaacgccgatgccgcacccatcgccgaagcgctgcgtgagcaggggctgccggtg
gagatcgtcggcctcggcggtctgctggccacacccgaggtcgccgatgtcgtcgccacc
ttgcggttgatcgccgaaccgggcgccggtggcgcggcggtgcgcatcctcaccggcgcg
cgctggcgcatcggcgtcgccgacctgtcggcgctgtcgcgccgggcgcgtgagctgtcg
atcgcccgcggcaccgcctcgaccggcgatatcagcgacggcgcggccctggccgtcgcc
ctgcgcgaggtcgcgccggaaccggccgaacaggccgggctcgccgacgccatcgccgat
cccggtccggccgaacagtattcgcccgacggctaccggcgcatcgtcgcgctcggtcgc
gaactggccgccctgcgcgaacgcagcggtcagccgttgaccgaactggtggccgatgtg
gaacgcaccatcggcgtcggcgtggaaacccaggcccggcgcgccatgtccggtgccggc
gccggtcgcgaacatctggatgcgttcgcggaggtggtcgcgggctacgccggtgactcc
ggcgcctcgctcagcggactactcgccttcctgaccgccgccgaatcggtggagaacggc
ctggaaccgggggaggtggaggtcgccaaggaccgtgtgcaggtgctgacggtgcacgcg
gccaaaggattggaatgggagatcgtcgccgtgccacacgtggtgcgagatgtgttcccc
tcgggcaaggccagtggcagctggctcggcgcgctcgccgaactgcccacctccttgcgc
ggcgaccgcgcccgcgatgacgacggcgccgacggcgtcccggtgctggatctgaccgac
ctctacgaccgcgccgatctggaccgcgccatcaaggagcacaaggccgccctggaccgt
cgccgcctcgacgaggaccgcaggctgttctacgtcgcgctcaccagaaccgagcggatg
ctgctggtttcgggccactactggtccgattcgagtccctcggtcaagggcccctcggaa
ttcctgctggaactgaagcaggcgatcgaagaccccgtaagccccgctcacggcgccgct
gacgtggaccgctgggacgatccgccggaacccgacgcggtcaacccgttcaccgacaac
ccgcccaccgcgcactggccgcgcgatccccttggccgccgccgcgcgccgatcgaagag
ggcgcacagctggtgcgcgccgcgatggcggaactgacggcccacccggacacccccgac
gacgaggacgatcccgacggctgggccgccgatgtggaagccctgctcgccgaacaccac
agcgccaccggcgtcgccgaagaagtggaactgcccagccgcctgcccgcgacggcactg
gtcgagttgcgcgccgatccggcccggctcgccgcacggctgcgtcgtccgctgccgtat
ccaccgaacccgctggcccgtcgcggcaccgccttccacgcctgggtgcagcgctggttc
gccgccgaagggctgctcggcctggacgaactacccggcgccgccgacaccgccgacggt
gccgacgcggaactggcgcgcatgcaagaggcgttcctgtcctcgcgctgggcacaccgc
agccccatcgaggtggaagtgccgttcgaaaccaccatcgcgggcacggtgatccgcggc
cggatggacgcggtcttcgccgaaccggacggacgctggaccgtcgtggactggaagacc
ggcgccgaacccgatgccgccgacgaacccgcggtggcggtgcagctggccgtctatcgg
ctggcctgggcccggttgatggccgcccgcaccggcgccgaccccgacgagctgctcgac
cggatcggcgccgcgttccactatgtgcgcagcggccgcaccgtcgccccggtcgatctg
ccgggcgcgaacgagctgaccgagctgatcagctccgcggcgcccgacggctga
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