Nocardia cyriacigeorgica: NOCYR_4424
Help
Entry
NOCYR_4424 CDS
T01756
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ncy
Nocardia cyriacigeorgica
Pathway
ncy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NOCYR_4424 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncy03019
]
NOCYR_4424 (deaD)
03009 Ribosome biogenesis [BR:
ncy03009
]
NOCYR_4424 (deaD)
Enzymes [BR:
ncy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NOCYR_4424 (deaD)
Messenger RNA biogenesis [BR:
ncy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NOCYR_4424 (deaD)
Ribosome biogenesis [BR:
ncy03009
]
Prokaryotic type
rRNA helicases
NOCYR_4424 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
UvrA_inter
Cas3-like_C_2
adh_short
Motif
Other DBs
NCBI-ProteinID:
CCF65181
UniProt:
H6RCN8
LinkDB
All DBs
Position
4870023..4871798
Genome browser
AA seq
591 aa
AA seq
DB search
MPSDDESAAAGGDTSPVDPTFADLGIDDRILRAIADVGYESPSPIQAATIPPLLAGADVV
GLAQTGTGKTAAFAIPILMGLEPTGKAPRALVLAPTRELAIQVAEAFGRYATHIPGLHVL
PIYGGQSYGVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLSQLQYLVLDEADEMLKMGFQ
EDVERILADTPADKQVALFSATMPAAIRKISKQYLHDPVEITVKAKTSTNTNITQRWVQV
SHQRKLDALTRILEVESFEAMIIFVRTKQATEELAEKLRARGFSAAAINGDIAQAQRERT
IGQLKAGTLDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEALL
FVAPRERHLLKAIERATRHPLTEMQLPSVDDVNAQRVSKFGDAITENLNSANLALFRKLI
EEYEREHNIALVDIAAALAVGSHDGDNFFMEPEPEPVERPHRERAPRRFDEERSGGPSRH
RATGAELATYRISVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPANLPQ
ETLEALRRTRISGVLIQLQLDQGPPGQRSFARGPRRDRDAGKRFERRKPRS
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgccaagcgacgacgaatccgccgccgcgggcggcgataccagccctgtcgaccccacc
ttcgccgatctcggcatcgatgaccgcatcctgcgggccatcgccgatgtcggctacgaa
tcgccgtcgccgatccaggcggcgacgatcccgccgctgctcgccggcgccgacgtcgtc
ggcctggcgcagaccggcaccggcaagaccgccgccttcgccatcccgatcctgatgggg
ctcgagcccaccggtaaggcgccgcgcgcgctggtgctcgccccgacccgggagctggcc
atccaggtagccgaggccttcggccgctacgccacacacatccccgggctgcatgtgctg
ccgatctacggcggacagagctacggcgtgcaactgtcgggtctgcggcgcggcgcgcat
gtggtggtcggcacgcccgggcgcgtgatcgaccatctggaaaagggcaccctcgacctg
tcgcagctgcaatacctggtgctcgacgaggccgacgagatgctcaagatgggcttccag
gaggacgtcgagcgcatcctcgccgacacccccgccgacaagcaggtggcgctgttctcg
gccaccatgcccgcggccatccgcaagatctccaagcagtatctgcacgatccggtcgag
atcaccgtcaaggccaagacctccaccaacaccaacatcacccagcgctgggtgcaggtg
tcgcaccagcgcaaactcgacgcgctgacccgcatcctcgaggtcgaatccttcgaggcg
atgatcatcttcgtgcgcaccaagcaggccaccgaggagctggccgagaagctgcgcgcc
cgcggtttctccgccgccgccatcaacggtgatatcgcccaggcccagcgtgagcgcacc
atcggccagctcaaggcgggcacgctggacatcctggtggccaccgacgtcgccgcccgc
ggcctcgacgtcgaccgcatctcgcacgtggtcaactacgacatcccgcacgacaccgag
tcctacgtgcaccgcatcggccgcaccggccgcgccggccgctccggtgaggcgctgctg
ttcgtcgccccgcgcgaacggcatctgctcaaggccatcgaacgcgccacccggcatccg
ctcaccgagatgcagctgcccagcgtcgacgacgtcaacgcccagcgggtgtcgaagttc
ggcgacgccatcaccgaaaacctcaactccgccaacctcgcgctgttccgcaagctgatc
gaggagtacgagcgcgagcacaacatcgccttggtcgatatcgcggccgcgctggccgtc
ggctcgcacgacggcgacaacttcttcatggagcccgaaccggagccggtcgagcgcccg
caccgcgagcgcgcgccgcgccgcttcgacgaggaacgttccggtggcccgtcccgccat
cgggccaccggcgcggagctggccacttaccggatcagcgtcggcaaacggcatcgggtg
gtgccgggcgcgatcgtcggcgcgatcgccaacgagggcgggctgcggcgcagcgacttc
ggtcatatcagcatccggcccgaccacagcctggtcgaactgcccgcgaacctgccgcag
gaaacgctggaagcgttgcggcgcaccaggatcagcggtgtgctgatccagttgcagctc
gatcagggcccgcccggacagcgctcgttcgctcgcggcccgcgccgcgaccgcgacgcc
ggtaagcgattcgagcgccgcaagccccggtcctga
DBGET
integrated database retrieval system
