KEGG   Nocardiopsis dassonvillei: Ndas_0664
Entry
Ndas_0664         CDS       T01248                                 
Name
(GenBank) DEAD/H associated domain protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
nda  Nocardiopsis dassonvillei
Brite
KEGG Orthology (KO) [BR:nda00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nda03400]
    Ndas_0664
Enzymes [BR:nda01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Ndas_0664
    5.6.2.6  RNA 3'-5' helicase
     Ndas_0664
DNA repair and recombination proteins [BR:nda03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    Ndas_0664
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD WH3_Lhr WH4_Lhr WH2_Lhr Helicase_C ResIII AAA_25 DUF6406 Cas3-like_C_2 AAA_22
Other DBs
NCBI-ProteinID: ADH66109
UniProt: D7AYC4
LinkDB
Position
1:complement(812684..817213)
AA seq 1509 aa
MSRAPRPLERFGPATRAWFDRAFPAGPTPAQTGAWESVQRGRNTLVVAPTGSGKTLSAFL
WSLDRLSSAPVPEDRARRCRVLYVSPLKALAADVERNLRVPLAGIAAAAEAGGHAVSPVT
VGVRTGDTPAAERRRLATRPPDVLITTPESLFLVLTSRAREGLAGVETVIVDEVHALAGS
KRGAHLALSLERLDALLDRPAQRIGLSATVRPPDLVARFLGGADVVAPPGSPGMDLRVVV
PVPDMEEPGVPEPTRPSGGAEGGGDARDAGGGSLWPHVERRVLDLVEAHRSTIVFTNGRR
TAEKLCARVNDLHAERHGGRLPPEEVPAQVIAQSGHSRGGPPVVARAHHGSMSKAERALI
EDELKQGRLRCVVATSSLELGVDMGAVDLVVQVASPPSVASGLQRVGRAGHQVGETSRGV
FLPRFRGDLLATAVVVGQMRAGAIERLEMPRNPLDVLSQQVVAMAAMDDWPVSELAALVR
RAAPFADLADTVLESVLDMLSGRYPSDEFAELRPRLVWDREADVLRARPGAQRLAVVSGG
TIPDRGVYGVHLTGRDGDPAPGRAPTRVGELDEEMVYESRVGDVFVLGSTSWRIEAITAD
RVLVSPAPGRPGRMPFWKADAQGRPAELGRAVGALTRELAAAEPARALALAEGAGLDAWA
ARNLVEYVSEQREATGHVPDDRTVVVERFRDQVGDWRAVVHSPLGARVHAPWAMALARRL
RDRFGADAQVVHGDDGIVLRLPDAGGWDRPGELADLVALDPEEVEEAVTGELPGSALFAA
RFRECAARALLLPRQRPDRRMPLWQQRLRASNLLSVAGRYGSFPIVLEAVRECLRDVFDV
PALVEALEGIRSRRTRVVEARTEAASPFARSLMMEYTAAFLYEGDAPAAELRAQALTLDA
SLLADLLGEADLRELLDTRVVEEVGALLQRTAPGSGARDSEGAADLLREVGPLTTEEAGA
RGARREWLEELESAGRVVRMAVAGAERWCAVEDAARLRDALGARPPAGVAGALLEPVEAP
TRDLVSRYARTHGPFSAGEAAARLGLGADVVEGVLRELSRLGRVHQGGFRPGGTGTEWCD
ADVLRRLRRGSVARLRSEVEPVAQTALAAFAPLWQRAVAGERWRGPDAVFEAVESLRGAT
VAASALETLVLPSRVEDYAPRRLDELTQAGEVVWAGAGALPGQDGWVCLAPADEAALLLP
EPVPPREGSTAHAVLEALRGGGALFFRDVADRVAGASGGSAVTDAELVAALWELVWSGCV
TNDTLAPLRAVLGSGAAPRRAPSRAGRLARPVLPTRSGPPAAAGRWWALPEREGDPTRRV
LARLEARLERRGVLVRGYQGGRISPDEYRVLRTMEESGRVRRGYFVDGLGGAQFALPGAV
DRLRAVSGGAAEPVVLAATDPANPFGTDLPWPGDAQARPGRSAGSLVVVDGGRLTLYVGR
GGRSVLTFGSPPALLERAARALAGAVRDGRAGALTVERADGAEVFATPVDAALAAAGFHV
TPKGLRLRP
NT seq 4530 nt   +upstreamnt  +downstreamnt
atgagccgtgcgccccgccccctcgaacgcttcggacccgccaccagggcctggttcgac
cgggcctttcccgcgggccccacccccgcccagaccggcgcctgggagtcggtccagcgc
gggaggaacaccctggtggtggccccgaccggctcgggcaagaccctgtcggccttcctg
tggtcgctggaccggctgtcctcggcccccgtccccgaggaccgcgcccgccgctgccgg
gtgctgtacgtgtccccgctcaaggccctcgcggccgacgtggagcgcaacctgcgcgtc
cccctggccgggatcgcggccgccgccgaggccggggggcacgcggtgtccccggtcacc
gtgggggtgcgcaccggcgacacccccgccgccgagcggcgcaggctcgccacccggccg
ccggacgtgctcatcaccacgcccgagtcgctgttcctggtgctcacctcgcgggccagg
gaggggctggccggggtggagacggtcatcgtcgacgaggtgcacgcgctcgcggggagc
aagcgcggcgcgcacctggcgctgagcctggagcggctggacgccctgctggaccgcccg
gcgcagcggatcggcctgtcggcgaccgtgcgcccgcccgacctggtggcgcggttcctg
ggcggcgcggacgtcgtggccccgcccggctcccccggcatggacctgcgcgtggtggtg
cccgtccccgacatggaggagcccggcgtcccggagccgacccggccctccggcggcgcg
gagggcggcggggacgcccgggacgcgggcggcgggtccctgtggccgcacgtggagcgg
cgggtcctggacctggtggaggcccaccgctccaccatcgtgttcaccaacggacgccgc
accgcggaaaagctgtgcgcccgcgtcaacgacctgcacgccgagcggcacggcgggcgt
ctgcctccggaggaggtacccgcccaggtcatcgcccagtccgggcacagccgcggcggc
ccgccggtggtcgcccgcgcccaccacggctcgatgtccaaggccgagcgggccctgatc
gaggacgagctgaagcaggggaggctgcgctgcgtggtggccacctccagcctggagctg
ggcgtggacatgggcgcggtcgacctggtggtgcaggtggcctcgccgccgtcggtggcc
agcggcctgcaacgggtcggccgggcggggcaccaggtgggcgagacctcgcgcggggtg
ttcctcccccggttccggggcgacctgctggcgacggccgtggtggtcgggcagatgcgc
gcgggcgccatcgagcgcctggagatgccgcgcaaccccctggacgtgctgtcacagcag
gtcgtggcgatggccgccatggacgactggccggtgtccgaactggccgccctggtccgg
cgggccgcgcccttcgccgacctggccgacacggtgctggagtcggtcctggacatgctc
tccggccgctacccctcggacgagttcgccgagctgcgcccccgcctggtgtgggaccgg
gaggcggacgtgctccgggcgcgcccgggcgcgcagcggctggcggtggtcagcggcggc
accatccccgaccggggcgtgtacggggtgcacctgaccgggcgggacggggaccccgcg
ccgggacgggcccccacccgggtcggcgagctggacgaggagatggtctacgagtcgcgg
gtgggcgacgtgttcgtgctggggtccacctcgtggcggatcgaggcgatcaccgccgac
cgggtgctggtctcccccgcgccggggcggccgggccggatgccgttctggaaggccgac
gcgcagggcaggcccgcggagctgggccgggcggtgggcgcgctgacccgggagctggcc
gcggcggaaccggcgcgggcgctggccctggccgagggggccggactggacgcgtgggcc
gcgcgcaacctggtggagtacgtctccgagcagcgggaggccaccgggcacgtgcccgac
gaccggaccgtggtcgtcgagcgcttccgcgaccaggtcggggactggcgcgcggtcgtg
cactccccgctgggcgcgcgggtgcacgcgccgtgggcgatggccctggcgcggcggctg
cgggaccggttcggcgcggacgcgcaggtcgtgcacggcgacgacgggatcgtgctgcgg
ctgccggacgccgggggctgggaccggccgggcgagctggccgacctggtggcgctggac
cccgaggaggtggaggaggcggtcaccggggagctgcccgggtcggcgctgttcgccgcg
cggttccgcgagtgcgcggcgcgggccctgctgctgccccgccagcggccggaccggcgg
atgccgctgtggcagcagcggctgcgggcctccaacctgttgtcggtggcgggccgctac
gggtcgttcccgatcgtgctggaggcggtgcgcgagtgcctgcgggacgtgttcgacgtg
ccggccctggtggaggcgctggagggcatccggtcccgtcggacacgggtggtggaggcg
cgcaccgaggcggcgtcgccgttcgcgcgctcgctgatgatggagtacacggcggcgttc
ctgtacgagggggacgcccccgcggccgagctgcgcgcgcaggcgctgaccctggacgcc
tcgctgctggccgacctgttgggcgaggcggacctgcgggagctgctcgacacgcgcgtg
gtggaggaggtcggcgcgctgctgcagcggaccgcccccggctcgggcgcccgggactcc
gagggcgcggccgacctgctgcgcgaggtggggccgctgaccacggaggaggccggggcc
cggggagcccggcgggagtggctggaggagctggagtccgcgggccgggtggtgcggatg
gccgtggcgggcgccgagcgctggtgcgcggtggaggacgcggcgcggctgcgcgacgcg
ctgggcgcgcggccgcccgccggtgtcgccggggccctcctggagccggtggaggcgccg
acccgcgacctggtctcgcgctacgcgcgcacgcacgggccgttctccgccggggaggcg
gcggcgcggctggggctcggcgcggacgtggtggagggcgtgctgcgggagctgtcccgg
ctggggcgcgtccaccagggcgggttccggcccggcgggacgggcaccgagtggtgcgac
gccgacgtgctgcggcggctgcggcgcgggtcggtggcgaggctgcgcagcgaggtggag
ccggtcgcgcagaccgccctggccgcgttcgcgccgctgtggcagcgcgccgtcgcgggt
gagcggtggcgcggaccggacgcggtgttcgaggccgtggagtcgctgcgcggcgcgacg
gtggcggcgtcggcgctggagaccctcgtgctgccctcccgtgtggaggactacgcgccc
cggcggttggacgagctgacacaggcgggcgaggtcgtgtgggccggtgcgggcgcgctg
cccgggcaggacgggtgggtgtgcctggccccggccgacgaggcggccctgctgctgccc
gaaccggtgccgccgagggagggttccacggcccacgcggtgctggaggcgctgcgcggg
ggcggggcgctgttcttccgcgacgtcgccgaccgtgtggcgggcgcgtcggggggctcg
gccgtgacggacgcggagctggtcgcggcgctgtgggagctggtgtggtcgggctgtgtc
accaacgacaccctggccccgctgcgcgcggtgctgggctcgggggccgccccgcgccgc
gcgccctcgcgtgcggggcggctggcgcgtccggtgctgcccacccggtcgggaccgccc
gcggccgcgggtcggtggtgggccctgcccgaacgggagggcgaccccaccaggcgggtc
ctggcgcggttggaggctcggctggagcgccggggcgtgctggtgcgcggctaccagggc
gggcggatctccccggacgagtaccgggtgctgaggacgatggaggagtcgggccgggtg
cgccgcggctacttcgtggacgggctgggcggcgcccagttcgcgctgccgggcgccgtg
gaccggctgcgcgcggtttccggcggcgcggcggaaccggtggtgctggcggcgaccgac
ccggcgaacccgttcggcacggacctgccctggcccggggacgcccaggccaggccgggc
cggtcggcgggctccctggtggtcgtcgacgggggtcggctgaccctgtacgtggggcgg
ggcggccgctcggtgctgaccttcggttcgccgcccgccctgctggagcgggcggcccgc
gccctggccggggcggtgcgggacggacgcgcgggggcgctgacggtggagcgcgccgac
ggggctgaggtgttcgcgacgccggtggacgcagccctggcggcggcggggttccacgtg
accccgaaggggctgcgcctgcgcccctga

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