Nocardiopsis dassonvillei: Ndas_1411
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Entry
Ndas_1411 CDS
T01248
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nda
Nocardiopsis dassonvillei
Brite
KEGG Orthology (KO) [BR:
nda00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nda03016
]
Ndas_1411
Enzymes [BR:
nda01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Ndas_1411
Transfer RNA biogenesis [BR:
nda03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Ndas_1411
Prokaryotic type
tRNA splicing ligases
Ndas_1411
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADH66843
UniProt:
D7B3B5
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All DBs
Position
1:1730333..1731520
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AA seq
395 aa
AA seq
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MPYTEVSGERVPIRMWAAPDEVEAAAMEQLRNVTRVPWVHGLAVMPDVHYGKGATVGSVI
AMRDAVSPAAVGVDIGCGMTAVRTDLTAERLPDDLRRLRSALEAVIPVGYHAHDEPVDPA
AVPTLREADWSGFWAGFDALADAVRPRRERALRQMGTLGGGNHFLEVCLDDGGAVWLVLH
SGSRNIGKELASHHIERAQALPHNQDLPDRDLAVFVTGTPEMDDYRRDLFWAQEYARRNR
DVMMGLACRTLAEQVPGTRFEQWISCHHNYVAEETYDGVDVLVTRKGAIRAGKGDLGIIP
GSMATGTYIVRGLGNPASFNSASHGAGRRMSRNKARRTFTEADLVEQTRGVECRKDRGVV
DEIPAAYKDLESVIEAQADLVEVVAHLRQVVCVKG
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgccctacaccgaggtttccggggaacgcgtccccatccgcatgtgggccgcgcccgac
gaggtcgaggccgcggccatggagcagctgcgcaacgtcacccgcgtgccgtgggtgcac
ggactggccgtcatgcccgacgtgcactacggcaagggcgccaccgtcggatcggtcatc
gccatgcgcgacgcggtcagccccgccgccgtcggcgtggacatcggctgcggcatgacc
gccgtgcgcaccgacctgaccgccgagcgcctgcccgacgacctccggcggctgcgctcc
gccctggaggccgtgatcccggtcggctaccacgcccacgacgaaccggtcgaccccgcc
gccgtccccaccctgcgcgaggccgactggtccggcttctgggcggggttcgacgccctg
gccgacgccgtgcgcccccgccgcgagcgcgccctgcgccagatgggcaccctcggcggc
ggcaaccacttcctggaggtgtgcctggacgacggcggcgccgtgtggctggtgctgcac
tccgggtcgcgcaacatcggcaaggagctggcctcccaccacatcgagcgggcccaggcg
ctgccgcacaaccaggacctgcccgaccgcgacctggcggtgttcgtcaccggcacgccc
gagatggacgactaccgccgggacctgttctgggcccaggagtacgcgcggcgcaaccgc
gacgtcatgatgggcctggcctgccgcaccctggccgagcaggtcccgggcacccgcttc
gagcagtggatctcatgccaccacaactacgtggccgaggagacctacgacggggtggac
gtgctcgtcacccgcaagggcgccatccgcgccggtaagggcgacctcgggatcatcccg
ggatccatggcgacgggcacctacatcgtgcgcggactgggcaacccggcctcgttcaac
tccgcctcgcacggggcgggacggcggatgagccggaacaaggcccgtaggaccttcacc
gaagccgacctggtcgagcagaccaggggagtggagtgccgcaaggaccggggcgtcgtg
gacgagatccccgccgcctacaaggacctggagtcggtgatcgaggcccaggccgacctg
gtcgaggtggtcgcccacctgcgccaggtggtgtgcgtcaagggctga
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