Nitrospira defluvii: NIDE0003
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Entry
NIDE0003 CDS
T01281
Symbol
gyrB
Name
(GenBank) DNA gyrase, subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
nde
Nitrospira defluvii
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nde03032
]
NIDE0003 (gyrB)
03400 DNA repair and recombination proteins [BR:
nde03400
]
NIDE0003 (gyrB)
Enzymes [BR:
nde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
NIDE0003 (gyrB)
DNA replication proteins [BR:
nde03032
]
Prokaryotic type
DNA Topoisomerases
NIDE0003 (gyrB)
DNA repair and recombination proteins [BR:
nde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NIDE0003 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
Dynamin_N
Motif
Other DBs
NCBI-ProteinID:
CBK39791
UniProt:
D8P7E9
LinkDB
All DBs
Position
2805..5279
Genome browser
AA seq
824 aa
AA seq
DB search
MAKDDQQDNSAKPKSDSYSADQIKVLEGLDAVRKRPAMYIGSTGVDGLHHLVYEVVDNSV
DEHMAGFGEAIEVTIHIDGSVTVVDNGRGIPTGMHSTQKKSAAEVALTVLHAGGKFEQGA
YTVSGGLHGVGISVVNALSEWLELEIWQDGQVFEQRYERGKPQAPLAVTGKTKRRGTKVR
FKPDGQIFETLEFSFDVLAQRLRELAFLNKGLSITLKDDRKEKEQVFHYKGGIVSFVDHL
NEAKTPLHKPIYVQTERADLILEVALQYNDGYAENLFSFANNINTKEGGTHLVGFKAALT
RTINSYANANDLLKKDTESLSGDDVREGLTAVVSVKVRNPQFEGQTKAKLGNSEVKGIVE
AAVNDALGTYFEENPPVARKIIGKAIDAARAREAARKAKDLIRRKSALDGGSLPGKLADC
SEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSDEIRTL
ILALGTGIGRKKEDSDKPDKEAFDIARTRYHKIVLMTDADVDGSHIRTLLLTFFFRQMPE
LLERGYIYIAQPPLFKVKKGKTERYLKDEPAMNEYLADLAVEEVEVALENGREYLSGRRL
LPTLKKLISFESLLHKVNKKHHEANMLRVFVDEPGLTREALKDQAALATIVANAKATLAL
VYPKAEPTIDILEDEEHQSSKLVCKVATGGIAYQLDVTHELVGSADFRELQKQAPSAMGL
GKPPYKIKIKGTEVHKNGSAELVQAILEEGKQGLNIQRYKGLGEMNPGQLWETTMDPEKR
TLLRVKLEDMTGVDEIFTILMGDEVEPRRNFIQQHALEVRNLDV
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggccaaggacgatcagcaggacaattctgccaagccgaaatccgacagttacagcgcg
gatcaaatcaaagttctcgaaggactcgacgccgtccggaagcgaccggcgatgtacatc
ggcagcaccggtgtcgacgggttgcaccatctcgtctatgaagtcgtcgacaacagtgtc
gacgagcacatggccggtttcggtgaagccatcgaggtcacgatccacatcgacggcagc
gtcacggtcgtggacaacggccgcggcattcccaccggcatgcattccacccagaagaaa
tccgccgccgaagtggccctcaccgtcctgcacgcgggcggcaagttcgagcagggcgcc
tacacggtttccggcgggttgcacggagtcggcatctcggtcgtgaacgcgctgtccgaa
tggctggagctggaaatctggcaggacggccaggtcttcgagcagcggtatgagcgcggc
aaaccccaagccccgctcgccgtcaccggcaaaaccaaacgccggggcacgaaggtgcgt
tttaagccggacggccagatttttgaaacactggaattcagtttcgatgtgttggcgcag
cggctccgcgagctggcctttctcaacaagggcctgtccatcacgctcaaggacgatcgc
aaggaaaaagaacaggtcttccattacaagggcgggatcgtctcgttcgtcgatcatctc
aacgaagccaagaccccgctgcataaaccgatttatgtgcagacggagcgggcggacctg
attcttgaagtggcgctgcaatataacgacgggtacgcggaaaacctcttttcgttcgcg
aacaacatcaacaccaaagaaggcggcacccacctggtgggcttcaaggccgcgctgacc
cgcaccatcaacagttatgccaacgctaacgatctcctcaaaaaagacaccgaatcgctc
agcggcgacgacgtgcgggaaggtttgaccgcggtcgtcagcgtgaaggtgcgaaatccg
cagttcgaagggcagaccaaggcgaagctcggcaacagcgaggtgaagggcatcgtcgag
gcggcggtgaacgacgccctcggcacgtactttgaagagaacccaccggtcgcccgcaaa
atcatcggcaaggcgatcgatgccgcgcgtgcccgcgaggcggccaggaaagccaaggac
ctcattcgccggaagagcgccttggacggcgggtcgttgcccggcaagctggccgactgt
tcggagaaggatccggcgttgagcgaactgttcatcgtcgagggtgattccgccggcggg
tcggccaagcagggccgcgaccggaagttccaggcgattcttccgctcaagggaaagatt
ttgaacgtcgagaaagcccgcttcgacaagatgctcagcagcgacgaaatccgcacgttg
atcctggcgctcggtaccggaatcggccgcaaaaaagaggactccgacaagccggacaag
gaagccttcgacattgcgcggacgcggtatcacaagatcgtgctcatgaccgacgccgac
gtggacggcagccacatccgcaccctcctgctgacctttttcttccgccagatgccggag
ctgctggaacggggctacatctacatcgctcagcctcccctctttaaggtcaagaagggc
aagacggagcggtatctcaaggatgagcctgcgatgaacgaatacctcgcggatctggcg
gttgaagaagtcgaagtggcgctcgagaacgggcgggagtacctgtcgggccgccgcctg
ctgccgacgctcaagaagttgatctccttcgaaagtctgctgcacaaggtgaataagaaa
catcacgaagccaatatgttgcgggtctttgtcgacgagccggggttaacgcgcgaggcg
ttgaaggatcaggccgcgctggccacgatcgtcgccaatgcgaaggccacgctggcgctc
gtctacccgaaggccgaaccgaccatcgacatcctggaagacgaagaacatcaatcgagc
aagttggtgtgcaaggtggccacgggcgggatcgcctatcagctggatgtgacgcatgag
ctggtcggatccgccgactttcgggaattacaaaaacaggcgccttcagcgatggggctt
ggcaagccaccgtataagatcaagatcaagggaaccgaagttcataagaacggctcagcc
gagctggtgcaggcgatcctggaggaaggcaagcagggtctgaacattcaacggtataaa
ggtctcggcgagatgaatcccggccagttgtgggagaccacgatggatccggaaaagcgg
acgctgctgcgtgtgaagctggaagacatgaccggcgtggacgagattttcacgatcctg
atgggcgacgaagtggagccccgccgcaatttcattcagcaacatgcgctggaagtccgg
aatctcgatgtatag
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