Nitrospira defluvii: NIDE0238
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Entry
NIDE0238 CDS
T01281
Name
(GenBank) putative Primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nde
Nitrospira defluvii
Pathway
nde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NIDE0238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nde03400
]
NIDE0238
Enzymes [BR:
nde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIDE0238
DNA repair and recombination proteins [BR:
nde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NIDE0238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_C
Zn_ribbon_PriA
PriA_3primeBD
Helicase_C
MarR_2
Cas3-like_C_2
DNA_pol3_chi
Motif
Other DBs
NCBI-ProteinID:
CBK40020
UniProt:
D8P9W1
LinkDB
All DBs
Position
206954..209179
Genome browser
AA seq
741 aa
AA seq
DB search
MIVPFGSQYLHGLVTAVYDRLPLGAPAQGLKALRSLSTASPDHLLTSSQIDLSRWVADRY
AAPWGQCIKLVAPFVDQVDRRPSRYRPTAQGMDNPSLPEGVGEVETQVLSRLRRRPKGIT
EASLVQGDKSRVMRALQILIRKGLVVRCDDAVVPRAAQAKKSPSPGAEQAVFPRLTVDDV
PPPLEAVTWPDTVGRALSQDTYGSFLVQGARSTRLWCLVQAARAARHRGRRVLVVTGDVE
NAARLAEALAAAGERPLLLHSGLSARERAAVWQSAQDSAATLLVGTRMAVFAPIDRLGLV
WVEGEDDASLKEEQSPRYHAREVARRRALCDQALLVLASGHPSLESWSAVQQGAMTACVY
RDPAGAPRVQVIDLREYSRETPAGTLLSPPLYDGIQDALRQKALAILYLNRKGFASVLHC
GDCGAMPQCDACSVALTFFRQSNHVRCHYCGRTKPVPDHCARCQSLKLEPVGSGTERIEE
AVRRKFPLARVGRVDGETIRRPADARSFSRLLAADELDIVIGTQMLFRFGLQARAAFVGV
PDADAGLHVPDFRSAERMYHGLVDAVELARPAHAGGVVMIQTRLTDHHAIMAVATGDHSV
FLEQEQVFRQMLQYPPLTSLMRLDVTGTLEAAVAQAAGRWAALLRAEVMSLERRKAAAGS
GLPLPERSTGLGGETSHIVILGPSPAPHAKARGRYCWQILVKSLSLEAGREIVVRTREVL
DRESRRGGLRFDIDVDPVAMT
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgtgccgttcgggtcccagtaccttcacggtctcgtcacggcggtgtatgaccgc
cttccgctcggcgctcccgcgcaggggctaaaagccctccgctccctttccacagcgtct
ccggaccacctgctcacctccagtcaaatcgatctcagccggtgggtggccgaccggtat
gctgcaccgtgggggcaatgcatcaagcttgtggcgccttttgtcgatcaggtcgaccgg
cggccatcacggtatcggccgacggcgcagggcatggacaatccgtccttacctgagggg
gtgggagaagtggaaactcaggtgctctcgcgtcttcgtcgtcgtcccaagggcattacg
gaggcctctctggtgcagggcgacaagtcccgtgtcatgcgcgcgttgcagatactgatt
cgaaaagggcttgtggtgcgctgcgatgatgcggtcgttccgagggcggctcaagcaaaa
aaatccccctccccgggggctgagcaggcggttttcccgagattgacagtggatgacgtg
ccgccaccgctggaagcagtcacgtggcctgataccgttggccgggcgctttcgcaggac
acatacggctcatttctggttcagggggctcgatccaccagactctggtgtcttgtgcag
gcagcccgggctgcgagacatcgtggacgtcgtgtgttggttgtcacgggagacgtcgaa
aatgccgctcgattggccgaagccctggcggcagcgggagaacggccgttgctcctgcac
agtggtctttcggcaagggaacgcgcagccgtatggcaatcggcacaggattccgcggcc
acgctcctggtcggcacccgcatggcggtgtttgcgcccatcgatcgattgggattggtg
tgggtggaaggcgaggacgatgcgtcccttaaggaggagcaatcgccccggtaccatgcg
cgggaggtggcacggcggcgcgcgctctgcgatcaagccttgttggtgctggcctcgggc
catccgtcgctggagagttggtcggcggttcagcaaggggccatgacggcctgtgtttac
cgagacccggcaggtgctccgagagtgcaggtcatcgatttgagagagtactccagggag
acccccgcgggtaccttgttatcgccgccgctctatgacggcattcaggacgccctgcgg
cagaaggccctggcgattctctatctgaaccgcaaggggtttgcgagcgtcttgcattgc
ggcgattgtggcgcgatgccgcaatgtgatgcgtgtagtgtggcgctgacgtttttccgg
cagagcaatcatgtgcggtgccattactgcgggcgaacaaagcccgtgccggatcattgc
gctcggtgccaatcgctcaagttggagccggtcgggtcaggcacggagcgcatcgaggag
gctgtacggcgaaaatttccactagcgcgggtgggccgtgtggatggtgaaaccatccgc
cgaccggctgatgcacggtcgttcagtcggctgcttgccgccgatgaattggacatcgtg
atcggcacgcagatgctgttccggttcggccttcaggcgcgggcggcgtttgtcggagtt
ccggatgccgatgccggtcttcatgtgccggactttcgctcggcggaacggatgtaccac
ggcctggtggatgccgtggagttagcccgacccgctcatgccggaggcgtggtgatgatc
cagacccggttaacggatcaccatgcgatcatggcggttgccaccggcgatcactcggtg
tttcttgaacaggagcaggtctttcgccagatgcttcagtatccgccgctgacctcgctt
atgaggttggatgtaaccgggacgcttgaagcggcggtagcccaggccgccggtcgttgg
gcggcattgctgcgagcggaggtgatgagtctagaacggcgtaaagccgcagccgggagc
ggtttgcctctgccggagcgttccacagggctgggtggagagacgagccacattgttatc
ctggggccttccccggcaccacatgccaaggcgcgaggtcgttattgctggcagattctg
gtcaagtccctatctcttgaggcgggcagagaaatcgttgtgcggactcgggaggtgctt
gatcgggagtcgcgacgaggtggtctccggttcgatatcgatgtcgatccggttgcgatg
acgtga
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integrated database retrieval system
