Nitrospira defluvii: NIDE0527
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Entry
NIDE0527 CDS
T01281
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
nde
Nitrospira defluvii
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nde03016
]
NIDE0527 (truD)
Enzymes [BR:
nde01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
NIDE0527 (truD)
Transfer RNA biogenesis [BR:
nde03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
NIDE0527 (truD)
Prokaryotic type
NIDE0527 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
CBK40302
UniProt:
D8PAP3
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All DBs
Position
469627..470679
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AA seq
350 aa
AA seq
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MPPPSWLDDTVPYLTASVPALGGRIRSTPDDFCVEERPLYLPCGEGEHLYIRVKKRGLST
PDLVLRLASQLHVKAQTVGVAGLKDAQAVTTQMLSLQGVKAETVAALSTDDRLLTLEILG
RHRNRLRKGHHAGNQFRLVIRDVRERSEDDLQRLFDELVRRGVPNYFGPQRQGRSGTNFQ
LGAELLQDEARRNKMPRNKRIWFMNAYQSHVFNRIVAKRIETIDRVFPGDWAMKSDNGAC
FPVEQQEVEQPRADRFEISPTGPLFGSRAPWATGVPGDIEREVVAELGTTPELLSKAGAE
CGFRGERRALRVRLNDLSWSLEGTVLTLSFWLPPGSYATSVLREVVKKSD
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgccgcctccgtcctggctcgatgatacggtgccctatttgaccgcctcggttcccgcc
ctcggcggccggatccgcagtaccccggatgatttttgtgtggaggagcgccccctctat
ctgccttgcggggagggtgagcatctgtatatccgggtgaaaaagcgtgggctctccacg
cccgacctcgtcttgcggctcgcttcgcagctccacgtcaaagcccaaactgtcggggtg
gccgggttgaaggatgcgcaagccgtgacgacgcagatgctgtcgttgcagggggtgaag
gccgaaaccgtcgcggcattatctaccgacgaccggttgctgacgctggaaatcctgggg
cgtcaccgcaaccggcttcgtaagggacatcatgcgggtaatcagtttcgcttggtgatc
cgggatgtgcgggagcgcagcgaagacgacctgcaacggttgtttgatgaattggtgcgg
cggggcgtccccaactatttcggtccgcaacggcaagggcgatcggggacgaacttccaa
ttgggtgccgagttgctgcaggacgaagcccgtcggaacaagatgcctcgcaataaacgc
atctggttcatgaacgcctatcagtcccatgtgtttaaccgcatcgtcgccaaacggatc
gagacgatcgatcgggtatttccgggcgactgggccatgaaatccgacaacggggcctgt
tttcccgtggagcagcaggaagtcgagcagccgcgtgccgaccggtttgaaatcagtccg
accgggccgctcttcggctcccgtgcaccctgggcgacgggagtcccgggtgacattgaa
cgggaggtggtggcagagttgggcactacgccggaactcctgtcgaaggccggcgccgaa
tgtggatttcgcggcgaacggcgagccctgcgggttcgtctcaacgacctgtcctggtcg
ctggagggcactgtgttgaccctatccttttggcttcctccggggtcctacgccacgagc
gtcttgcgggaagtggtgaagaaaagcgactag
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