Nitrospira defluvii: NIDE1020
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Entry
NIDE1020 CDS
T01281
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
nde
Nitrospira defluvii
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nde03032
]
NIDE1020 (topA)
03400 DNA repair and recombination proteins [BR:
nde03400
]
NIDE1020 (topA)
Enzymes [BR:
nde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NIDE1020 (topA)
DNA replication proteins [BR:
nde03032
]
Prokaryotic type
DNA Topoisomerases
NIDE1020 (topA)
DNA repair and recombination proteins [BR:
nde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NIDE1020 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
CBK40781
UniProt:
D8PC22
LinkDB
All DBs
Position
997232..999571
Genome browser
AA seq
779 aa
AA seq
DB search
MAKSLIIVESPTKARTITKYLGRGYSVMASVGHVKDLPTSKLGVDLDNDFEPQYVTIKGK
SKVLADIKKKAQEVDTVFLAPDPDREGEAIAWHIAQELHGKGKKKDGKVYRVLFNEITES
AIKRALKSPGEIDMKLVQAQQARRVLDRIVGYQGSQLLWKKVRRGLSMGRVQSVAVRLIC
DREKEREAFRAEEYWSIVALLAGDNPPAFEAKLHSMNGQDADIGTGERAQQILDAVQGKS
FVVQSIERKEKKRNPVAPFITSRLQQEAARKLHFSPKKTMTLAQQLYEGIEIGAEGPTGL
ITYMRTDSPRISQEATEDARVVIRERFGVEYLPATPNVYKTQKAAQEAHEAIRPTSAARD
PESIRQYLEQDQYNLYKLIWNRFIASQMVPAIMDVTRVDSSPMGTPDRYVFRTTGTVVKF
AGHTAVYLEGTDKELPSHKPKNEQETDDESDRQLPALREGESLHLVAQEAQTLPGLVSKQ
HFTQPPPRYNEALLIRELEEKGIGRPSTYASIISTIQDRKYVEKVEGRFLPTETGRTVND
FLLKGFPDLLDTEFTSHMEEQLDEVEEGTKPWVSAVRDFYTPFVREMELAQGIPGPKDIV
EPPTNLPCEKCGRMLEIKWGRNGKFLACPAYKDDPPCKNTQNFEKLPDGTIKIVPKLEET
TDEKCEKCSSPMVVKSGRFGKFLACSAYPECKTTKAIALGVKCPQPGCGGDLVQKRTKKG
RNFYSCSRYPQCEYALWDRPINKPCPKCQAPFLVEKVSKQAGRSVQCRNEDECGYREAG
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggccaaatcgctgatcatcgttgagtcgccgaccaaggcgcgcaccatcacgaaatat
ctcggtcgtggctattccgtcatggcctccgtcggccacgtcaaggatctccctaccagc
aagctgggcgtggatctcgacaacgattttgaaccccagtacgtcaccatcaagggcaag
tcgaaagttcttgccgacattaagaagaaagctcaggaagtcgacaccgtgtttctggcg
ccggaccctgatcgcgagggcgaagcgattgcctggcatattgcgcaggaattgcacggc
aaggggaaaaagaaagacggcaaagtctatcgtgtattgttcaatgagattacggaatcg
gcgatcaagcgggcgctgaagtcgccgggtgaaatcgatatgaagctggtccaggctcag
caggcgagacgagtcctcgatcgcatcgtggggtaccagggcagtcagttgctatggaaa
aaggtgcgccgcggcctcagcatgggccgggtgcaatccgtggccgtgcggttgatatgc
gaccgcgagaaggagcgcgaagccttccgggcggaagaatactggtctatcgtcgcgctg
ttggccggcgacaatcctccggcctttgaagccaaattgcattcgatgaacggtcaggat
gccgatatcggcacgggtgagcgggcccagcagatcctcgatgccgtgcaggggaagtcg
ttcgtcgtgcaatcgatcgagcgcaaggaaaagaaacgcaatccggtcgcaccgttcatc
acgagccggcttcagcaggaagccgcgagaaagctgcatttcagtccgaagaagacgatg
acactggcgcagcagttgtatgaaggcatcgaaatcggggcagaggggccgaccggtctc
attacttatatgagaacggactcaccgaggatttcgcaagaagcgaccgaagacgccaga
gttgtgattcgggagcggttcggagtggagtatttgcctgctacgcccaatgtctacaaa
acccagaaagccgcgcaagaggcgcatgaagccatccggccgacgtccgcggcgcgcgac
cccgaatccatcaggcaatatctggagcaggaccagtacaacctgtataagctgatttgg
aatcgcttcattgcctcacagatggttcctgcgatcatggatgtgacgcgtgtggattcg
tctccaatgggaacgccggatcgatatgtgtttcgcacgaccggcaccgtggtcaagttc
gccggccatacggcggtgtacttggagggaaccgacaaggaattgccgtcgcacaagccc
aagaatgagcaggagactgatgacgaatccgatcgccagctgcccgcattgcgcgaaggt
gaatctttgcatctggtcgctcaggaagcccagaccttgcccgggctcgtttctaaacag
catttcactcagccgcctccccggtacaatgaagcactgctgattcgagagctggaggaa
aaggggatcggccggccgtccacctacgcttcgatcatttcgacgatccaagaccggaag
tatgtcgagaaggtcgaagggcggtttctcccgaccgaaaccgggagaacggtaaatgac
tttctgttgaagggatttccggatctgctggatacggaatttacgtcccacatggaagag
cagctcgatgaagttgaagagggcaccaagccctgggtctcagccgtgcgcgatttttac
acacccttcgtgagggaaatggaactcgctcagggcattcctgggccaaaggatatcgtc
gagccgcccacgaatctgccctgtgaaaaatgcggccgcatgctggagatcaaatgggga
cgaaatgggaagttcctcgcatgccccgcctataaggacgatcctccctgcaagaacacg
caaaattttgaaaaattgccggatgggacgattaagattgttcctaagctggaagagacg
acggacgagaagtgcgaaaagtgctccagcccgatggtggtcaaatcgggccgcttcggt
aagtttctggcctgttccgcgtatccggaatgtaagacgaccaaagccattgctctgggt
gtgaaatgtcctcagccagggtgcgggggggatctggttcagaagcgcacgaaaaagggt
cgcaatttttattcgtgtagtcgttacccgcaatgtgagtatgcgctttgggaccgcccc
atcaataagccctgtcccaagtgtcaggcgccgtttcttgttgagaaggtcagcaagcaa
gccggtcgttccgtgcaatgccgcaatgaagatgagtgcggctatcgggaggctggctag
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