KEGG   Nitrospira defluvii: NIDE1167
Entry
NIDE1167          CDS       T01281                                 
Name
(GenBank) putative ATP-dependent DNA helicase Lhr
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
nde  Nitrospira defluvii
Brite
KEGG Orthology (KO) [BR:nde00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nde03400]
    NIDE1167
Enzymes [BR:nde01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     NIDE1167
    5.6.2.6  RNA 3'-5' helicase
     NIDE1167
DNA repair and recombination proteins [BR:nde03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    NIDE1167
SSDB
Motif
Pfam: DEAD_assoc DEAD Helicase_C ResIII Lhr_WH MarR_2 DUF1424
Other DBs
NCBI-ProteinID: CBK40924
UniProt: D8PCG5
LinkDB
Position
1137179..1141558
AA seq 1459 aa
MSALPFHPIVAEWFSTRFSSATNVQMQAWPAIQSGRDVLISAPTGSGKTLAAFLSCIDTL
FQQAVRCELRDETQVLYVSPLKALSNDVQKNLQQPLSEIGQAALAAGLLLPELRVVVRTG
DTPMAERQQMLRRPPHILITTPESLFILLTAEKSRAMLKTVRTVIVDEIHAVAPNKRGAH
LALSLERVTALTGAEVQRIGLSATQRPIETIAKFLVGNRNPSSVDGHTSYQDVSHQPSAI
GSAPCTVIDVGHRRDMDLAVEVPKDELGAVATNAIWSDIYDRVAALVEAHRSTLVFVNTR
RLAERVSHYLEERLRHLGDEVVAAHHGSLSRTIRLSAEDRLKTGAVRVVVATASLELGID
VGTVDLVCQIGSPRSIATGLQRIGRAGHWVHAIPKGRLFATTRDELIECAALIRAIRAGV
LDRIEVPPAPLDVLAQQIVAAAATQSWDEAELYDLCRRAMPYRDLDRSTFDAVVTMLADG
YVTSRGRGRAYLHHDRINRHIRGRRGARLAAITSGGAIPDTANYAVIAEPDGTVVGSVDE
DFAVESLAGDIILLGNTSWRIKGVETGKLRVEDAQGAPPTIPFWRGEAPARTAELSAEVA
RLKADIDHRLAADQALSMASAPPVQWLRQECGLDQRGAQQAVEYILAGKAVLGTVPTQQT
IVAERFFDESGGMQLVIHAPFGGRVNRAWGLALRKRFCVTFDFELQAAATDEGIVLSLGE
KHSFPLETVFAFLNVNTLREVLTQAVLQAPMFMTRWRWNASRALALLRFVGGKRVAPQIQ
RMRAEDLLAAVFPDAIACQDNFQGARTVRQIPDHPLAQETIRDCLTEAMDLDGLIAVLEK
IERGAMTCLAVDTPMPSAFCHEILNANPYAFLDDAPLEERRARAVDMRRSLPPELAGGMG
ALDQSAVDQVSEESWPVVRDAEEFHDALLSLGWVPCERMPGWDLLVPTLAAAGRVATLWQ
GETKLGWLAAEYRHYACLLFPDARIDPATGPVDSTEQVEQEEVLNRVVLGWMESIGPTTA
GELSQTLHLSESDVQSAFLRLESQGHLLRGRFSPHASRTTSDVVEWCHRRLLARIHRLTI
GRLRKEIEPVTAAEFMRFLFQWQHAAPGARLHGEAGLLEVVKQLGGFEAAASAWESQILR
VRMAKYQPEWLDRLCLSGALMWGRLTPHPRLMQELNPVSGRRVIPTRVAPVGIFVREDGP
VLLAAVGEELARLDLSARVSGSAQAIRHCLQARGASFFSELLHGTRLLASEVEDGLWELV
AAGLVTADGFDNLRSLIDPKRRRAEASDRSRRPRHVGGRWSLLRSTESSPLSAITATEHL
ARQLLQRYGVVFRDLLGRESTVSSWRDLLVCYRRLELTGEIRGGRFVSGFTGEQFALPGA
LESLRALKKRPGAATQQDIKISAADPLNLAGLILPGPRIAAVPSNFVVFRDGVVVRTVTG
RETNDRPGSPVVEVGRVSG
NT seq 4380 nt   +upstreamnt  +downstreamnt
atgtctgccctgccgtttcatcccatcgttgccgagtggttctcgacccgattctcctct
gcgacgaatgtccagatgcaggcctggcctgcgattcaatccggtcgtgacgtgctgatc
tcagcgccgacggggtcggggaagaccctcgcggcctttctctcctgcatcgatactctc
tttcagcaggcggtacgctgtgagctgcgggatgagacgcaagtgctctatgtctcgccg
ctgaaagcactcagcaacgatgtgcagaagaatctgcaacagccgctcagcgagatcggg
caggccgcgttggctgccggcctgttgctgcctgagttgcgggtggtcgtgcgtaccggc
gacacgcctatggccgagcggcaacagatgcttcggcgtccgccgcacattctgatcacg
acgcccgaatcgttgtttatcctgctgacggcggaaaagagccgggcgatgctgaaaacc
gtgcgcaccgtcattgtggatgaaattcatgccgtggcgcccaataagcgaggggcgcat
ctggccctgtcgctggagcgggtcacggcgctcaccggcgccgaggttcaacgtatcggc
ctgtcggcaacgcagcgtcccatcgaaaccattgcgaagttcttggtcggaaataggaac
ccgtcaagcgtcgacggtcacacgtcataccaagacgtcagccatcagccatcagccatc
ggctctgcgccttgtacggtcatcgacgtgggccatcgccgcgatatggatctggccgtt
gaagtgccgaaggatgaactcggcgctgtcgcgacgaatgcgatctggagcgatatctat
gatcgtgtcgccgcgctggtcgaagcgcatcggtccaccctggtgtttgtgaatacgcga
cggctggctgagcgggtctcgcactatttggaagagcggttgcggcatcttggggacgaa
gtggtcgcggcgcatcacggcagtctgtctcgaacgatccgcctgtcggccgaagatcga
ttgaaaacgggcgccgtgcgcgtggtggtagccacggcatcgctggaactcggcatcgat
gtcggaaccgtcgatctcgtgtgccagatcgggtccccccgctcgatcgccaccggcctc
cagcggatcggtcgggcgggccattgggttcacgccattcccaagggccggctcttcgcc
actacgcgcgacgaattgatcgaatgcgccgcgttgatccgggcgatcagggccggggtg
ttggaccgcatcgaggtgccccctgcgccgctggatgtattagcccagcagatcgtagcc
gccgcggcgacccagtcgtgggatgaggcagagctctacgatctctgccggcgcgcgatg
ccctaccgcgatctggatcggtcgaccttcgatgccgtcgtcaccatgctcgccgatggg
tacgtgaccagccggggccgggggcgggcctacctccatcacgatcgcatcaatcgtcac
atacggggtcgtcgcggggctcgcctggcggccattacctcaggcggtgcaatccccgac
acggccaactacgccgtgattgcggagccggacggcacggtggtggggtcggtcgatgag
gatttcgcggtcgagagtctggccggagacatcatcctgctgggcaacacgtcctggcgg
atcaaaggtgtggagaccggcaagctgcgggtcgaagatgcgcagggcgctccgccgacg
attccgttctggcgcggggaggccccggcccgtacggcggaactgtccgcggaagtggcg
cgtctgaaggccgacatcgaccatcgacttgctgccgaccaggcgctctccatggcttct
gcaccgcccgtgcaatggctcaggcaggaatgtggtctcgaccagcggggggcgcaacag
gcagtcgaatatatcctggcgggcaaggcggtgctggggacggtcccgacgcagcagacc
atcgtggcggagcgattcttcgacgaaagcggcgggatgcagctggtcatccatgcgccg
ttcggcgggcgggtcaaccgagcctggggcttggcattgcgcaagcggttttgtgtgaca
ttcgacttcgaattgcaggccgccgccacggatgaaggtatcgttctctcgttgggggag
aagcacagctttccgctcgagacggtgtttgcgtttctgaacgtcaacacgttgcgggag
gtgctcacacaggcggtgctgcaagcgccgatgttcatgacccggtggcggtggaatgcc
tcgcgggccctggcgttgcttcggtttgtcggagggaagcgggtggcgccacagatccaa
cgaatgcgcgccgaagatctcctcgccgcggtgtttcccgatgcgattgcctgtcaggat
aatttccagggtgcgcgaacggtccggcagattccggaccatccgttggcgcaggagacg
atccgtgattgtctgacggaagcgatggatctcgacggtttgatcgccgtcctggagaag
atcgagcgcggcgcgatgacctgtctggccgtcgatacgccgatgccttcggccttctgc
cacgaaattttgaacgccaatccctatgccttcctcgatgatgcgccgttggaggagcgc
cgggccagggcggtggatatgcggcgcagtttgccgcctgagctggcgggtggcatgggc
gcgctggatcaatcggccgtcgatcaggtcagtgaggagtcctggccggtggtgcgggac
gcggaggaatttcacgatgcgctgttgtcgctgggctgggtgccctgcgagcgaatgcca
ggctgggacttgctggtgccgacgctggcggcggccggtcgcgtcgcgaccctctggcag
ggagagacgaagctggggtggctggcagcggagtatcgtcattacgcttgcctgctcttt
cccgatgcgcggatcgatccggcgaccggcccggttgattcgacggaacaggtggagcag
gaagaggtcctgaaccgggtggtgctgggatggatggagagtatcggccccacgacggcc
ggggaactgtcgcagacgctgcatctgtccgagtcggacgttcagtcggcgtttctgcga
ctcgagtcccagggccatctgctccgtggccgattttcgcctcacgcttcacgaacgacg
agtgacgtcgttgagtggtgtcatcgccgcctgctcgccaggattcaccggttgacgatc
gggcggttacgcaaagaaatcgagccggtgacggctgccgagttcatgcggttcttgttt
cagtggcaacatgcggcgcccggcgcgcgtctacacggggaagccggactccttgaagtc
gtcaaacaactcggtggatttgaggccgctgcctcggcctgggaatcacagatcctgcgc
gttcgcatggccaagtatcagcccgagtggctcgatcggctttgtttgagcggcgcactg
atgtggggtcgcctgacgccgcatccccgtctgatgcaggagttgaatcctgtgtcgggg
cgccgggtgattccgacccgggttgcgcccgtcggtatctttgtgcgcgaagatggaccg
gtcttgctggcggcggtcggtgaggagttggcgcgtctcgatctgtccgcacgcgtgagt
ggttcggcgcaagccatccgacattgcctgcaggcgcggggcgcgagttttttcagcgag
ctgttgcatgggacgcggctgctggcctccgaagtggaagacgggttgtgggaactggtc
gcggccggcctggtgaccgccgacgggttcgacaatctgcgttcgctgatcgatccgaag
cggcggcgtgcggaggcgtcggatcgaagtcgccggccgcgccatgtggggggacgctgg
tcgctcctgagatcgactgagagcagtccgctgtcggccatcaccgctaccgagcatttg
gctcggcaactgttgcagcggtatggagtagtgtttcgagatctcctggggcgggagtcg
acggtctcgtcctggcgcgatctgctggtctgttaccggcggctcgaattgacgggtgaa
attcgcggggggcggtttgtgagcggctttaccggcgagcagtttgccctgccaggcgca
ttggagtcgttgcgggcgctcaagaagcggcctggtgctgcgactcagcaggatatcaaa
atttccgccgccgatccgttgaatctcgcggggctcattctgcctgggcctcgtattgcc
gcggtgccgtcgaacttcgtggtctttcgggatggggtggtcgttcgtacggtgacgggg
cgcgagacgaacgaccggcccgggtcgccggtcgtcgaggtcggtcgcgtcagcggatag

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