Nitrospira defluvii: NIDE1238
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Entry
NIDE1238 CDS
T01281
Name
(GenBank) Squalene synthase
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
nde
Nitrospira defluvii
Pathway
nde00100
Steroid biosynthesis
nde00909
Sesquiterpenoid and triterpenoid biosynthesis
nde01100
Metabolic pathways
nde01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
NIDE1238
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
NIDE1238
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
nde01006
]
NIDE1238
Enzymes [BR:
nde01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
NIDE1238
Prenyltransferases [BR:
nde01006
]
Terpene biosynthesis
Squalene/phytoene synthase
NIDE1238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
CBK40994
UniProt:
D8PCN5
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All DBs
Position
1206540..1207499
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AA seq
319 aa
AA seq
DB search
MLPATVRDQMGLAYLFARAADTIADTDLIDREQRLRYLTQFRMQFSSSAGARSDLHAIQA
ALIPHQADSAERVLLQRLEDCLTLYDQFDPADQERIRWLMGVLPDGMAMDLSHFQGDSAQ
NLTAFQTLDELDQYTYYVAGCVGEFWTRMVCAHCPSMSDWDVTKMSAIGVRFGKGLQLTN
IVKDLARDLHRGRCYVPEPLLREAGLTPVDLLNRESLPKFRPVLMRLIKMAIEHLDQGWM
YTMALPRLEIRQRLACMWPILLAGETLKRVAAAPDLLDPSVNVKAPRSVVYRVMAMTTLT
GGCGYVGTAYWGRLRKQIV
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
gtgctgccggcgacggtgcgcgaccagatgggcttggcctacctgtttgcgcgtgccgcc
gacacgattgccgataccgatctgatcgaccgcgagcagcgactccgctatctcacccag
tttcgaatgcagttcagttccagcgctggggcgcggagtgacctgcacgcgattcaagcc
gccttgattcctcatcaagccgactccgcagagcgagtgttgctccagcggctggaagac
tgtttgacgctgtacgatcaattcgatccagccgaccaagaacggattcggtggttgatg
ggggtgttgccggacgggatggcgatggatctttcgcattttcagggcgattcggctcag
aatctaacggcgtttcagaccctggacgaattggatcagtacacgtactacgtcgccggt
tgtgtcggtgaattctggacccgaatggtctgcgcgcactgcccgtcgatgtcggattgg
gatgtgacgaaaatgtcggccatcggggtacgattcggcaagggattgcagctgacgaat
atcgtgaaggatctggcccgggatctccatcgtgggcggtgttatgtgcctgagccgctt
ctccgtgaggcgggcctgacgccggttgatttgctgaatcgagagagcctgccgaagttc
aggccggtattgatgcggttgatcaaaatggccatcgaacacttggatcagggctggatg
tacaccatggccttgcctcgccttgaaattcgtcagcgattggcatgtatgtggccgatt
ctgttggcgggtgaaacgctgaaacgtgtggcggctgcgcctgatctcctcgacccgtcg
gtcaacgtcaaagcgccgcgctccgtcgtctatcgcgtcatggcgatgaccaccttgacg
ggcggttgcggatacgtagggacggcctactgggggcgcttgcggaagcagatcgtctga
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