Nitrospira defluvii: NIDE1472
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Entry
NIDE1472 CDS
T01281
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nde
Nitrospira defluvii
Pathway
nde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIDE1472 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nde03019
]
NIDE1472 (rhlE)
Enzymes [BR:
nde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NIDE1472 (rhlE)
Messenger RNA biogenesis [BR:
nde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIDE1472 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Rv3660c_N
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
CBK41215
UniProt:
B3U4Q3
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All DBs
Position
1405472..1406767
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AA seq
431 aa
AA seq
DB search
MQTTAFTSFDSLGVSPTLLRNLTKAGFAEPTAIQAQAIPHALAGRDVLGCAQTGTGKTAA
FVIPMLERLSGTPKGQPRALILAPTRELAIQIQATIDTLGRDLQLFATTVVGGADMQAQV
RGLRQRPDIIVATPGRLLDHMWNGTISLLAMSILVLDEADRMLDMGFAQQINQILDAMPE
ERQTLLFSATMPNDLARLAQASVKDPVRVMVTKSATTADGVTQAVHHTTHDRKNGLLMSL
LQSESDTVLVFARTKHRADRLGNLLDSAGHRVAVLHGGRTLPQRRAALEGFRRGTYRVLV
ATDIAARGIDVANIAHVINYDVPNCPEDYVHRIGRTARMRTTGRATTFVTSEDQEQLRAI
ERLLGQAVPRAEGSPVSMSVSPRPDGHAPRSEPERRRRRGGSSQVWSQSADGGSREANGG
IKNGSDLGPKS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
gtgcagacgactgcgtttacgagttttgactcccttggtgtgtctcccaccctgttgcga
aatctgaccaaggctggttttgcggaaccgacggccatccaggctcaggccattccccat
gcgttggcaggccgagatgtcttgggatgtgcgcagactggaacgggaaagactgcggcc
tttgtgattccgatgttggagcggctcagcgggaccccgaaagggcagcctcgtgcgctc
attctagcgccgacacgcgagttggcgatacagattcaagcgacgatcgatacgttgggt
cgcgatctgcaattatttgctacgacggtggtgggcggtgccgatatgcaggcgcaggtg
agagggctgcggcagcgccccgacatcatcgtggcgactccggggcggttgctcgatcat
atgtggaacggcaccatcagcctgcttgccatgtccatcctggttcttgacgaggccgat
cggatgttggatatgggatttgcccagcagatcaaccagattctggacgccatgccggag
gagcggcagacgttgctgttttccgcgacgatgccgaacgatctcgccagattggcgcag
gccagcgtgaaagacccggtgcgggtcatggttacgaagtcggcgacgactgccgacggc
gtgactcaagccgtgcaccataccacgcacgatcgtaagaacgggttactgatgtcgttg
ctccagtccgagtccgataccgtgctggtgtttgccaggacgaaacatcgtgcggatcga
ttgggaaatctgctcgattcagccggccaccgcgtcgcggtgctccatggcggaaggacc
ctgccgcaacgtcgagccgcgttggaaggattccggcgaggcacctatcgagtgttggtg
gccactgatattgccgcgcgcggtattgatgtggcaaatatcgcccacgtgattaactac
gatgtgccgaattgtcccgaggactatgtgcaccggatcgggcgcaccgcccggatgaga
acaaccggtcgcgcgaccacatttgtgacgtccgaggaccaggagcaattgcgggcgatc
gaacgtttactcgggcaggcagtgcctcgcgccgaggggagcccggtctcgatgagcgtc
tcgccacgaccggatggtcatgcaccacggagcgagccggagcgtcgacgccgacgcggc
ggatcttctcaggtgtggagtcagagcgccgacggaggttcccgggaagccaatggggga
atcaagaacggaagtgatcttgggccaaagtcttaa
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