Nitrospira defluvii: NIDE1475
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Entry
NIDE1475 CDS
T01281
Symbol
nifA
Name
(GenBank) Sigma-54 dependent transcriptional regulator NifA
KO
K15836
formate hydrogenlyase transcriptional activator
Organism
nde
Nitrospira defluvii
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nde03000
]
NIDE1475 (nifA)
Transcription factors [BR:
nde03000
]
Prokaryotic type
Helix-turn-helix
Other families
NIDE1475 (nifA)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
GAF_2
GAF_3
AAA_5
HTH_8
Mg_chelatase
AAA_2
AAA
AAA_3
MCM
AAA_16
AAA_22
AAA_7
IstB_IS21
PduV-EutP
PocR
wHTH-HSP90_Na-assoc
Motif
Other DBs
NCBI-ProteinID:
CBK41218
UniProt:
B3U4Q6
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All DBs
Position
complement(1408075..1409628)
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AA seq
517 aa
AA seq
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MQRATLNFETLLEVTNALNSQRDIDSLWRVIADQIRKVIPWDRAGITLYESQTDSFRFYA
VITNMATPALAHDSVIPREGSAVGWVHDNRRLHIREDLQKEQVFLEDRYYVQEGLGRMIN
MPLLVRDHCLGTLNIGSVQTGHLDQDDCKFLQQVATQIAYAIDHVLAYEQIQQLSDRLRR
ENEYLAEEVKASRNLRLVVGTSSSFRKVVDLLKAVAPTDTTVLLLGETGTGKEVLAQALH
DLSLRCHKPFIRVNCAALPSGLIESELFGHERGAFTGAQLRRAGRFELAHTGTLFLDEIG
EMPLETQAKLLRVLQDGMVDRIGGTQPVAVDVRLVAATNADLQAAVRQGTFRADLFYRLH
IFPIALPPLRDRREDIHLLAQHFLALIGGKLKRAHLAFDPQSMARLLTYNWPGNVRELQN
VIERAVILSGSSQVTVDEMLLPVVQAVHSPSSSLPVSLGDLERYHIIEVLEQTKWRIYGE
QGAAHLLGLNPETLRSRLRKLGLRRPSSISPEPTALP
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgcgccacgctaaattttgaaacgctgctggaagtgaccaacgccctgaactcg
caacgggacatcgacagtctctggcgcgtcatcgccgatcaaattcgaaaggtcatccct
tgggacagggccgggatcacgctctacgaatcacagaccgattcctttcgcttttatgcc
gtcatcaccaacatggcgactccggccctggcacacgatagcgtgattccacgagaaggc
agcgcagtcggttgggtccatgacaaccgtcgcttgcatatcagggaggatctccagaaa
gaacaagtcttcctggaggatcggtactatgtacaggaaggtttgggacgaatgatcaat
atgcccttgctcgtccgggatcattgtctcggcacattgaacatcggcagcgttcaaacc
gggcatctcgatcaggacgattgtaaattcctccagcaagtcgctacccagatcgcatat
gcgatcgaccacgtattggcatatgagcaaatccaacagctgagtgaccgcttgcgccga
gaaaatgagtatctcgcagaagaggtcaaagcgagccgcaatctgcgcctggtcgtgggc
acctcttcgtctttcagaaaggtcgttgatcttctgaaggctgtcgccccgacagacacg
acagttctccttctcggggaaaccggcaccggcaaagaagtcctggcacaggctcttcac
gatttgagcctccgctgtcacaagcccttcattcgcgtcaactgtgccgcgctgccgtca
ggactcattgaaagtgagttgttcggccatgagcggggagcgttcaccggcgcgcagctc
cgaagagccgggcgatttgaactggcccacaccggcaccctgtttttggatgagatcggt
gaaatgccgttggaaacccaagcgaagttgctacgagtgttgcaagacggcatggtcgat
cgtatcggaggaacccaacccgtcgcagtcgacgttcgattggtcgcagccacaaacgct
gaccttcaggccgccgttcggcagggaacgtttcgcgcagacctgttctaccgccttcat
attttccccatcgccctgccgcccttacgggatcggcgggaagacattcacttgcttgcg
cagcatttcctggcgctgattgggggcaagctcaagcgggcacatctcgccttcgatcca
caatcgatggcgcgactcctcacctacaactggccaggtaacgtgcgtgagcttcaaaat
gtgatcgaacgcgccgtgattctttccggctcctctcaagtcaccgtagacgaaatgttg
ctcccggtcgtacaggctgttcacagcccctccagcagcctaccagtcagcttgggggat
cttgagcgttaccacatcatcgaggtgctggaacaaacgaaatggcgaatctatggcgag
caaggggccgcgcatctactgggactcaaccctgaaacgctgcggagccgcctgagaaaa
cttgggctgcgacggccgtctagcatatcgcctgaacctacggctctcccctaa
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