Nitrospira defluvii: NIDE2309
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Entry
NIDE2309 CDS
T01281
Symbol
fliA
Name
(GenBank) Flagellar-specific RNA polymerase sigma 28 factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
nde
Nitrospira defluvii
Pathway
nde02020
Two-component system
nde02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NIDE2309 (fliA)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NIDE2309 (fliA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nde03021
]
NIDE2309 (fliA)
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
nde02035
]
NIDE2309 (fliA)
Transcription machinery [BR:
nde03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NIDE2309 (fliA)
Bacterial motility proteins [BR:
nde02035
]
Flagellar system
Flagellar assembly proteins
Stator
NIDE2309 (fliA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
UPF0122
AAA_16
PCI
Motif
Other DBs
NCBI-ProteinID:
CBK42022
UniProt:
D8PFI5
LinkDB
All DBs
Position
2253280..2254023
Genome browser
AA seq
247 aa
AA seq
DB search
MSAVRNAPRRVIAEADRERVIQEFTHVVKAMAHRLAFRLPAYMDAEDLISVGIMGLMDAM
DKYDPTREAKFKTYAEFRIRGAMLDEIRSMDWIPRSVHERITLLQKTYSELLHRLGRPPT
DQEVGKELKMSAEELDEFLTRSRGAVVISLDDLGVQDADGHKIISVLTDSNQPDPLSVLV
NERARHVLEAAIHDLPEKERLVLSLYYFEELTMKEIGQALKVTESRVCQIHSKAILHLKA
RLEPVDV
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggtcagaaacgccccgcgccgggtgattgcggaggcggatcgcgaacgggtg
attcaggaattcacccacgtcgtgaaggccatggcccatcggctggcgtttcgcctgccg
gcttatatggacgcggaggatctcatatccgtcgggatcatgggcctcatggatgcgatg
gacaagtacgatccgactcgcgaagccaagttcaaaacctacgcggagttccgtatccgt
ggcgcgatgctcgatgaaatccggtcgatggattggattcctcgctcggtccatgaacgg
attacgctcctgcaaaagacgtattccgagctgttgcacagactcgggcggccgccgacg
gaccaggaagtcggcaaggaactgaagatgtccgcggaggaactggatgaattcctcact
cgctcacgcggcgccgtggtgatcagcctggacgacctcggcgtgcaggatgcggacggg
cataaaatcatcagtgtattgaccgactccaatcagccggatcctctctcggtcctggtg
aacgaacgggcgcgccacgtgctcgaagcggcgatccatgatctgccggaaaaggaacgg
ttggtattgtcgctttactatttcgaggaactcacgatgaaggagatcgggcaggcgctc
aaggtgaccgaatcgcgcgtatgccagattcattcgaaagccatccttcatttgaaagcg
cggctcgaaccggtggatgtgtga
DBGET
integrated database retrieval system
