Nitrospira defluvii: NIDE2445
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Entry
NIDE2445 CDS
T01281
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
nde
Nitrospira defluvii
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nde03016
]
NIDE2445 (rnd)
Enzymes [BR:
nde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NIDE2445 (rnd)
Transfer RNA biogenesis [BR:
nde03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NIDE2445 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Hydant_A_N
CENP-S
E1_4HB
Motif
Other DBs
NCBI-ProteinID:
CBK42155
UniProt:
D8PFW8
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All DBs
Position
2392952..2394157
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AA seq
401 aa
AA seq
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MATLEPDQTFITSDDALDALCDQLIHSSVIAIDTEFMGEEHFIPRLELIQVAAEGVAAVI
DFPAVQEAAPMARFWEIVCDARIEKVLHAGRQDLELFAHHAGRLPKPFFDTQIAAAMVGY
GAQTAYANLVQRVQGVKLDKAHTFTNWSQRPLSREQLVYALDDVTFLLPVHRHLRQKLSV
MGRSEWVDEEFARLEVSLGAQARDPQERYQRIRGWDSLKPRAAGVLRDLAAWREGEARRR
NVPRGRVMRDEVLVQLARQTPRTLDQLRGMRGMYSSEVERNGQALLATMQQALARPESEW
PEVPRDRKPDPESTGVLELLQAVLKSRASVENIAPTLIATTGDLQALVERASPVEEMDIP
VLRGWRRQLVGETLLSVLSGDLKVWIDPQLGKLRFGHLDHA
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggccacactggaaccggatcagacgttcattacctccgacgatgccctcgatgccctc
tgtgatcaactcatccacagttcggtcattgccatcgataccgagtttatgggggaggag
catttcatcccccgcctggagttgattcaggtcgcggcggaaggggtggcggcggtcatc
gactttcccgccgtgcaggaggccgcgccgatggcccgattctgggagatcgtctgcgat
gcccgcatcgaaaaagtgctccatgcgggacggcaggacctggaactgtttgcacaccat
gccgggcgtctgccgaagccctttttcgatacacagatcgccgccgccatggtcggatac
ggcgcacagaccgcctatgccaacctggtccaacgcgtccagggcgtcaaactcgacaag
gcccatacgtttacgaattggagccagcggccgctgagccgggagcagctggtctacgcc
ctggacgacgtgacctttctactgccggtgcaccggcatctccggcagaaattgtctgtg
atgggtcgctcggagtgggtggatgaggagttcgcccgcctggaagtctctcttggcgca
caggcgcgggacccccaggagcggtatcaacgcattcgcggatgggatagcctcaaacca
cgcgcggccggcgttctgcgtgacctggcggcctggcgtgaaggggaggcccggcgtcgc
aacgtcccgcggggacgagtgatgcgtgacgaggtgctggtgcagctggcgcgtcaaacg
ccgcgcacgctggatcaattgcgcggcatgcgggggatgtattcgtcggaagtcgaacgg
aacggacaggcgcttctcgccaccatgcagcaggcgttggcgcgaccggaatcggaatgg
cccgaggtcccgcgggatcgcaagcccgatccagaatccaccggggtgctggagctgctg
caggcggtgctgaagtcccgtgcctccgtggagaacatcgccccgacgttgatcgccacc
acgggtgacttgcaggctctggtcgaacgcgcgtcaccagtggaagaaatggacattccc
gtgttacgaggctggcgacggcaactggtcggagaaacgctcctcagcgtcctatccggc
gacctgaaggtgtggatcgacccgcaactcggcaagctccgcttcggccatctcgatcac
gcgtag
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