Nitrospira defluvii: NIDE2463
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Entry
NIDE2463 CDS
T01281
Symbol
rpoZ
Name
(GenBank) DNA-directed RNA polymerase, omega subunit (modular protein)
KO
K03060
DNA-directed RNA polymerase subunit omega [EC:
2.7.7.6
]
Organism
nde
Nitrospira defluvii
Pathway
nde03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIDE2463 (rpoZ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nde03021
]
NIDE2463 (rpoZ)
03400 DNA repair and recombination proteins [BR:
nde03400
]
NIDE2463 (rpoZ)
Enzymes [BR:
nde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIDE2463 (rpoZ)
Transcription machinery [BR:
nde03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIDE2463 (rpoZ)
DNA repair and recombination proteins [BR:
nde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIDE2463 (rpoZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb6
Cyclin
Motif
Other DBs
NCBI-ProteinID:
CBK42173
UniProt:
D8PFY6
LinkDB
All DBs
Position
2410403..2410765
Genome browser
AA seq
120 aa
AA seq
DB search
MGEMLSLLPEYATGEFDSRHRLVIVAAQRAKQLVQGARMASASKYTKETSIALDEVLRHK
VKFLIGQEAREAIKESKRVKEGETERLAMMTGEDAKEIKKELSVYVDDTVQPAPAPEGEE
NT seq
363 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaatgttaagtttgttaccggaatacgccaccggggagttcgattcacgccac
cggctggtgatcgtcgcggcgcagcgggcgaaacaactcgtgcagggcgcacgcatggcg
tcagcatcgaaatacacgaaagaaacgagcatcgcgctcgacgaagtccttcggcacaag
gttaaattcctgatcggacaggaagcacgcgaggccattaaagaatccaaacgggtcaag
gaaggtgagacggaacgcctggccatgatgaccggcgaggacgccaaggaaatcaagaaa
gagctcagcgtctacgtcgacgataccgtccagcctgcccctgctccggagggcgaggag
tag
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